Evidence map›Paper›PMID 27129237›Full record

ArticleThe Journal of biological chemistry2016

Quantitative Correlation between Infectivity and Gp120 Density on HIV-1 Virions Revealed by Optical Trapping Virometry.

Michael C DeSantis, Jin H Kim, Hanna Song, Per Johan Klasse, Wei Cheng

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  5. Review
  6. Article
  7. Optical Tweezers to Study Viruses.Sub-cellular biochemistry · 2024
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Michael C DeSantisFrom the Department of Pharmaceutical Sciences, College of Pharmacy, and.
Jin H KimFrom the Department of Pharmaceutical Sciences, College of Pharmacy, and.
Hanna SongFrom the Department of Pharmaceutical Sciences, College of Pharmacy, and.
Per Johan Klassethe Department of Microbiology and Immunology, Weill Cornell Medicine, Cornell University, New York, New York 10065.
Wei ChengFrom the Department of Pharmaceutical Sciences, College of Pharmacy, and Department of Biological Chemistry, University of Michigan Medical School, Ann Arbor, Michigan 48109 and chengwe@umich.edu.ORCID 0000-0003-0332-1566
American Association of Colleges of Pharmacy · USCornell University · USUniversity of Michigan · US

Funding

NEUTRALIZATION OF PRIMARY HIV1 VIRUSESR37AI036082 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI MOORE, JOHN P · 1998 to 2017
$7.0M
Single Cell with One Particle Entry (SCOPE) for Study of HIV InfectionDP2OD008693 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHENG, WEI · 2011 to 2012
$2.5M
Coupled Interactions Limiting HIV-1 Infection Verified by Single Molecule StudiesF32GM109771 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DESANTIS, MICHAEL · 2014 to 2015
$106k
R37 AI36082NIAID NIH HHS R37 AI036082NIGMS NIH HHS F32 GM109771NIH HHS DP2 OD008693
6 · The paper itself

Abstract

The envelope glycoprotein (Env) gp120/gp41 is required for HIV-1 infection of host cells. Although in general it has been perceived that more Env gives rise to higher infectivity, the precise quantitative dependence of HIV-1 virion infectivity on Env density has remained unknown. Here we have developed a method to examine this dependence. This method involves 1) production of a set of single-cycle HIV-1 virions with varied density of Env on their surface, 2) site-specific labeling of Env-specific antibody Fab with a fluorophore at high efficiency, and 3) optical trapping virometry to measure the number of gp120 molecules on individual HIV-1 virions. The resulting gp120 density per virion is then correlated with the infectivity of the virions measured in cell culture. In the presence of DEAE-dextran, the polycation known to enhance HIV-1 infectivity in cell culture, virion infectivity follows gp120 density as a sigmoidal dependence and reaches an apparent plateau. This quantitative dependence can be described by a Hill equation, with a Hill coefficient of 2.4 ± 0.6. In contrast, in the absence of DEAE-dextran, virion infectivity increases monotonically with gp120 density and no saturation is observed under the experimental conditions. These results provide the first quantitative evidence that Env trimers cooperate on the virion surface to mediate productive infection by HIV-1. Moreover, as a result of the low number of Env trimers on individual virions, the number of additional Env trimers per virion that is required for the optimal infectivity will depend on the inclusion of facilitating agents during infection.

Indexed as

HEK293 CellsHIV-1HIV Envelope Protein gp120HIV InfectionsHumansOptical TweezersVirionVirulenceHIV Envelope Protein gp120glycoproteinhuman immunodeficiency virus (HIV)infectionoptical tweezersprotein cross-linkingsingle-molecule biophysicssingle particle analysis

Identifiers

PMID27129237
PMCPMC4933225
OpenAlexW2343916431

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.