Evidence map›Paper›PMID 27127534›Full record

ArticleComputational and mathematical methods in medicine2016

The Virtual Screening of the Drug Protein with a Few Crystal Structures Based on the Adaboost-SVM.

Meng-yu Wang, Peng Li, Pei-li Qiao

Abstract read
In one paragraph

Article in Computational and mathematical methods in medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Deep Learning in Virtual Screening: Recent Applications and Developments.International journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Meng-yu WangSchool of Computer Science and Technology, Harbin University of Science and Technology, Harbin 150080, China.
Peng LiSchool of Computer Science and Technology, Harbin University of Science and Technology, Harbin 150080, China; School of Software, Harbin University of Science and Technology, Harbin 150080, China.
Pei-li QiaoSchool of Computer Science and Technology, Harbin University of Science and Technology, Harbin 150080, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Using the theory of machine learning to assist the virtual screening (VS) has been an effective plan. However, the quality of the training set may reduce because of mixing with the wrong docking poses and it will affect the screening efficiencies. To solve this problem, we present a method using the ensemble learning to improve the support vector machine to process the generated protein-ligand interaction fingerprint (IFP). By combining multiple classifiers, ensemble learning is able to avoid the limitations of the single classifier's performance and obtain better generalization. According to the research of virtual screening experiment with SRC and Cathepsin K as the target, the results show that the ensemble learning method can effectively reduce the error because the sample quality is not high and improve the effect of the whole virtual screening process.

Indexed as

Drug DesignSupport Vector MachineAlgorithmsArea Under CurveBinding SitesCathepsin KChemistry, PharmaceuticalCombinatorial Chemistry TechniquesComputational BiologyCrystallizationDatabases, ProteinHumansHydrogenImaging, Three-DimensionalLigandsModels, StatisticalCathepsin KHydrogenLigandsProteins

Identifiers

PMID27127534
PMCPMC4834164

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.