Evidence map›Paper›PMID 27127503›Full record

ArticleGastroenterology research and practice2016

Genetic Abnormalities in Biliary Brush Samples for Distinguishing Cholangiocarcinoma from Benign Strictures in Primary Sclerosing Cholangitis.

Margriet R Timmer, Chiu T Lau, Sybren L Meijer, Paul Fockens, Erik A J Rauws, Cyriel Y Ponsioen, Silvia Calpe, Kausilia K Krishnadath

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Article in Gastroenterology research and practice, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Margriet R TimmerDepartment of Gastroenterology and Hepatology, Academic Medical Center, 1100 DD Amsterdam, Netherlands; Center for Experimental and Molecular Medicine, Academic Medical Center, 1100 DD Amsterdam, Netherlands.
Chiu T LauDepartment of Gastroenterology and Hepatology, Academic Medical Center, 1100 DD Amsterdam, Netherlands; Center for Experimental and Molecular Medicine, Academic Medical Center, 1100 DD Amsterdam, Netherlands.
Sybren L MeijerDepartment of Pathology, Academic Medical Center, 1100 DD Amsterdam, Netherlands.
Paul FockensDepartment of Gastroenterology and Hepatology, Academic Medical Center, 1100 DD Amsterdam, Netherlands.
Erik A J RauwsDepartment of Gastroenterology and Hepatology, Academic Medical Center, 1100 DD Amsterdam, Netherlands.
Cyriel Y PonsioenDepartment of Gastroenterology and Hepatology, Academic Medical Center, 1100 DD Amsterdam, Netherlands.
Silvia CalpeDepartment of Gastroenterology and Hepatology, Academic Medical Center, 1100 DD Amsterdam, Netherlands; Center for Experimental and Molecular Medicine, Academic Medical Center, 1100 DD Amsterdam, Netherlands.
Kausilia K KrishnadathDepartment of Gastroenterology and Hepatology, Academic Medical Center, 1100 DD Amsterdam, Netherlands; Center for Experimental and Molecular Medicine, Academic Medical Center, 1100 DD Amsterdam, Netherlands.
Academic Medical Center · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background. Primary sclerosing cholangitis (PSC) is a chronic inflammatory liver disease and is strongly associated with cholangiocarcinoma (CCA). The lack of efficient diagnostic methods for CCA is a major problem. Testing for genetic abnormalities may increase the diagnostic value of cytology. Methods. We assessed genetic abnormalities for CDKN2A, TP53, ERBB2, 20q, MYC, and chromosomes 7 and 17 and measures of genetic clonal diversity in brush samples from 29 PSC patients with benign biliary strictures and 12 patients with sporadic CCA or PSC-associated CCA. Diagnostic performance of cytology alone and in combination with genetic markers was evaluated by sensitivity, specificity, and area under the curve analysis. Results. The presence of MYC gain and CDKN2A loss as well as a higher clonal diversity was significantly associated with malignancy. MYC gain increased the sensitivity of cytology from 50% to 83%. However, the specificity decreased from 97% to 76%. The diagnostic accuracy of the best performing measures of clonal diversity was similar to the combination of cytology and MYC. Adding CDKN2A loss to the panel had no additional benefit. Conclusion. Evaluation of MYC abnormalities and measures of clonal diversity in brush cytology specimens may be of clinical value in distinguishing CCA from benign biliary strictures in PSC.

Identifiers

PMID27127503
PMCPMC4834158
OpenAlexW2320078495

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.