Evidence map›Paper›PMID 27126795›Full record

ArticleJournal of experimental botany2016

Effects of down-regulating ornithine decarboxylase upon putrescine-associated metabolism and growth in Nicotiana tabacum L.

Heidi L Dalton, Cecilia K Blomstedt, Alan D Neale, Ros Gleadow, Kathleen D DeBoer, John D Hamill

Open access · greenAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Heidi L DaltonSchool of Biological Sciences, Monash University, Melbourne, Victoria 3800, Australia Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany.
Cecilia K BlomstedtSchool of Biological Sciences, Monash University, Melbourne, Victoria 3800, Australia.
Alan D NealeDeakin University, Centre for Regional and Rural Futures (CeRRF), Geelong, Victoria 3216, Australia.
Ros GleadowSchool of Biological Sciences, Monash University, Melbourne, Victoria 3800, Australia.
Kathleen D DeBoerThe UWA Institute of Agriculture, The University of Western Australia, Crawley, WA 6009, Australia.
John D HamillDeakin University, Centre for Regional and Rural Futures (CeRRF), Geelong, Victoria 3216, Australia john.hamill@deakin.edu.au.
Deakin University · AUMonash University · AUMax Planck Institute for Chemical Ecology · DEUniversity of Western Australia · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transgenic plants of Nicotiana tabacum L. homozygous for an RNAi construct designed to silence ornithine decarboxylase (ODC) had significantly lower concentrations of nicotine and nornicotine, but significantly higher concentrations of anatabine, compared with vector-only controls. Silencing of ODC also led to significantly reduced concentrations of polyamines (putrescine, spermidine and spermine), tyramine and phenolamides (caffeoylputrescine and dicaffeoylspermidine) with concomitant increases in concentrations of amino acids ornithine, arginine, aspartate, glutamate and glutamine. Root transcript levels of S-adenosyl methionine decarboxylase, S-adenosyl methionine synthase and spermidine synthase (polyamine synthesis enzymes) were reduced compared with vector controls, whilst transcript levels of arginine decarboxylase (putrescine synthesis), putrescine methyltransferase (nicotine production) and multi-drug and toxic compound extrusion (alkaloid transport) proteins were elevated. In contrast, expression of two other key proteins required for alkaloid synthesis, quinolinic acid phosphoribosyltransferase (nicotinic acid production) and a PIP-family oxidoreductase (nicotinic acid condensation reactions), were diminished in roots of odc-RNAi plants relative to vector-only controls. Transcriptional and biochemical differences associated with polyamine and alkaloid metabolism were exacerbated in odc-RNAi plants in response to different forms of shoot damage. In general, apex removal had a greater effect than leaf wounding alone, with a combination of these injury treatments producing synergistic responses in some cases. Reduced expression of ODC appeared to have negative effects upon plant growth and vigour with some leaves of odc-RNAi lines being brittle and bleached compared with vector-only controls. Together, results of this study demonstrate that ornithine decarboxylase has important roles in facilitating both primary and secondary metabolism in Nicotiana.

Indexed as

Gene Expression Regulation, PlantTranscriptomeDown-RegulationNicotianaOrnithine DecarboxylasePlant ProteinsPlant RootsPutrescineOrnithine DecarboxylasePlant ProteinsPutrescineAlkaloidgene expressionODCphenolamidePMTpolyamineputrescineQPTRNAi.

Identifiers

PMID27126795
PMCPMC4892731
OpenAlexW2399688903

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.