Evidence map›Paper›PMID 27125657›Full record

ArticleBulletin of mathematical biology2016

A Mathematical Model of Granule Cell Generation During Mouse Cerebellum Development.

Shoshana R Leffler, Emilie Legué, Orlando Aristizábal, Alexandra L Joyner, Charles S Peskin, Daniel H Turnbull

Open access · greenAbstract read
In one paragraph

Article in Bulletin of mathematical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Of mitogens and morphogens: modelling Sonic Hedgehog mechanisms in vertebrate development.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Review
  3. Deletion ofFrontiers in cell and developmental biology · 2020
    Article
  4. Article
  5. Opposite regulation of Wnt/β-catenin and Shh signaling pathways by Rack1 controls mammalian cerebellar development.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Shoshana R LefflerSkirball Institute of Biomolecular Medicine, New York University School of Medicine, 540 First Avenue, New York, NY, 10016, USA.
Emilie LeguéDevelopmental Biology Program, Sloan Kettering Institute, New York, NY, USA.
Orlando AristizábalSkirball Institute of Biomolecular Medicine, New York University School of Medicine, 540 First Avenue, New York, NY, 10016, USA.
Alexandra L JoynerDevelopmental Biology Program, Sloan Kettering Institute, New York, NY, USA.
Charles S PeskinCourant Institute of Mathematical Sciences, New York University, 251 Mercer Street, New York, NY, 10012, USA. peskin@cims.nyu.edu.
Daniel H TurnbullSkirball Institute of Biomolecular Medicine, New York University School of Medicine, 540 First Avenue, New York, NY, 10016, USA. daniel.turnbull@med.nyu.edu.
New York University · USKettering University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ANIRBAN MAITRA · 1985 to 2026
$83.1M
System Biology Center in New YorkP50GM071558 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI IYENGAR, SRINIVAS RAVI V · 2007 to 2017
$22.8M
Engrailed genes and cerebellum morphology, spatial gene expression and circuitryR37MH085726 · NIMH · SLOAN-KETTERING INST CAN RESEARCH · PI JOYNER, ALEXANDRA L. · 2014 to 2023
$6.7M
Ultrasound and MR Imaging of Mouse Brain Development.R01NS038461 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TURNBULL, DANIEL H · 1999 to 2016
$6.5M
TRAINING PROGRAM IN DEVELOPMENTAL GENETICS.T32HD007520 · NICHD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TREISMAN, JESSICA E · 1999 to 2023
$3.9M
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA016087NICHD NIH HHS T32 HD007520NIGMS NIH HHS P50 GM071558NIMH NIH HHS R37 MH085726NINDS NIH HHS R01 NS038461
6 · The paper itself

Abstract

Determining the cellular basis of brain growth is an important problem in developmental neurobiology. In the mammalian brain, the cerebellum is particularly amenable to studies of growth because it contains only a few cell types, including the granule cells, which are the most numerous neuronal subtype. Furthermore, in the mouse cerebellum granule cells are generated from granule cell precursors (gcps) in the external granule layer (EGL), from 1 day before birth until about 2 weeks of age. The complexity of the underlying cellular processes (multiple cell behaviors, three spatial dimensions, time-dependent changes) requires a quantitative framework to be fully understood. In this paper, a differential equation-based model is presented, which can be used to estimate temporal changes in granule cell numbers in the EGL. The model includes the proliferation of gcps and their differentiation into granule cells, as well as the process by which granule cells leave the EGL. Parameters describing these biological processes were derived from fitting the model to histological data. This mathematical model should be useful for understanding altered gcp and granule cell behaviors in mouse mutants with abnormal cerebellar development and cerebellar cancers.

Indexed as

AlgorithmsAnimalsAnimals, NewbornCell DifferentiationCerebellumComputer SimulationMathematical ConceptsMiceMice, Neurologic MutantsModels, NeurologicalNeural Stem CellsNeuronsDifferential equationsEGLExternal granule layerGranule cell precursor cells

Identifiers

PMID27125657
PMCPMC4911999
OpenAlexW2345058924

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.