Evidence map›Paper›PMID 27124899›Full record

ArticleAIDS (London, England)2016

Non-R5-tropic HIV-1 in subtype A1 and D infections were associated with lower pretherapy CD4+ cell count but not with PI/(N)NRTI therapy outcomes in Mbarara, Uganda.

Guinevere Q Lee, Chris Lachowski, Eric Cai, Viviane D Lima, Yap Boum, Conrad Muzoora, Adrienne Rain Mocello, Peter W Hunt, Jeffrey N Martin, David R Bangsberg and 1 more

Abstract read
In one paragraph

Article in AIDS (London, England), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 2 countries.

Guinevere Q LeeaBC Centre for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada bMbarara University of Science and Technology, Mbarara, Uganda cUniversity of California, San Francisco, California dHarvard Medical School eHarvard School of Public Health fMassachusetts General Hospital, Boston, Massachusetts, USA.
Chris Lachowski
Eric Cai
Viviane D Lima
Yap Boum
Conrad Muzoora
Adrienne Rain Mocello
Peter W Hunt
Jeffrey N Martin
David R Bangsberg
P Richard Harrigan
Apple (Israel) · IL

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
TB PREVENTION AND HIV IN THE HOMELESS--AN INTERVENTIONR01MH054907 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BANGSBERG, DAVID ROY · 1995 to 2014
$20.7M
West Coast AIDS and Cancer Specimen Resource (ACSR)U01CA066529 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCGRATH, MICHAEL SHANNON · 1994 to 2012
$16.1M
Alcohol use and ARV treatment outcomes in UgandaR21AA014784 · NIAAA · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI BANGSBERG, DAVID ROY · 2003 to 2005
$1.2M
CIHRNCI NIH HHS U01 CA066529NIAAA NIH HHS R21 AA014784NIAID NIH HHS P30 AI027763NIMH NIH HHS R01 MH054907
6 · The paper itself

Abstract

backgroundPrevious studies suggest that infection with non-R5-tropic subtype B HIV-1, compared with R5, is associated with a more rapid decline in CD4 cell count, but does not affect PI/(N)NRTI therapy outcome. Here, we explored clinical correlates associated with viral tropism in subtype A1 and D infections.

methodsHIV-1 subtype A1 (n = 196) and D (n = 143) pretherapy plasma samples and up to 7.5 years of posttherapy virologic and CD4 data were collected from a cross-sectional cohort in Mbarara, Uganda. Tropism and subtype were inferred using env V3 (geno2pheno) and gp41 (RIP) Sanger sequences. For each subtype, R5 infection was compared with non-R5 in terms of: pretherapy viral load and CD4 cell count (Mann-Whitney tests), and therapy outcomes, including time to virologic suppression, postsuppression virologic rebound, CD4 decline and CD4 recovery (log-rank tests).

resultsA 94% of all patients in this study achieved virologic suppression within median 3 months posttherapy. In both subtypes, non-R5 infection was associated with lower pretherapy CD4 cell count (non-R5 vs. R5; A: median 57 vs. 147 cells/μl P = 0.005; D: 80 vs. 128 cells/μl P = 0.006). Multivariable linear regression confirmed that tropism, not subtype nor the interaction between subtype and tropism, was a significant predictor of pretherapy CD4 cell count (P < 0.0001). None of pretherapy viral load, time to virologic suppression, virologic rebound, CD4 decline nor CD4 recovery was significantly different (all P > 0.09).

conclusionRegardless of HIV-1 subtype or tropism, the majority of patients in this Ugandan cohort responded to therapy, even though non-R5 infection was associated with lower pretherapy CD4 cell count.

Indexed as

GenotypeViral TropismAdultAnti-Retroviral AgentsCD4 Lymphocyte CountCross-Sectional Studiesenv Gene Products, Human Immunodeficiency VirusFemaleHIV-1HIV InfectionsHumansMaleSequence Analysis, DNATreatment OutcomeUgandaAnti-Retroviral Agentsenv Gene Products, Human Immunodeficiency Virus

Identifiers

PMID27124899
PMCPMC4925292
OpenAlexW2343543293

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.