Evidence map›Paper›PMID 27123951›Full record

ArticleNature protocols2016

Ex vivo tools for the clonal analysis of zebrafish hematopoiesis.

Ondrej Svoboda, David L Stachura, Olga Machonova, Leonard I Zon, David Traver, Petr Bartunek

Open access · greenAbstract read
In one paragraph

Article in Nature protocols, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.3field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

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  11. Modeling hematopoietic disorders in zebrafish.Disease models & mechanisms · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Ondrej SvobodaDepartment of Cell Differentiation, Institute of Molecular Genetics AS CR v.v.i., Prague, Czech Republic.ORCID http://orcid.org/0000-0001-7443-175X
David L StachuraDepartment of Biological Sciences, California State University Chico, Chico, California, USA.
Olga MachonovaDepartment of Cell Differentiation, Institute of Molecular Genetics AS CR v.v.i., Prague, Czech Republic.
Leonard I ZonStem Cell Program, Dana-Farber/Boston Children's, Boston, Massachusetts, USA.
David TraverDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, California, USA.
Petr BartunekDepartment of Cell Differentiation, Institute of Molecular Genetics AS CR v.v.i., Prague, Czech Republic.ORCID http://orcid.org/0000-0002-6202-7650
Institute of Molecular Genetics · RUCalifornia State University, Chico · USHoward Hughes Medical Institute · USUniversity of California San Diego · US

Funding

Project-002U54DK110805 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI ORKIN, STUART H, ZON, LEONARD IRA · 2016 to 2020
$5.9M
EMBRYONIC HEMATOPOIESISR01HL048801 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI ZON, LEONARD IRA · 1992 to 2016
$5.7M
Zebrafish Stem and Progenitor Cells and their Dysregulation in LeukemogenesisK01DK087814 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI STACHURA, DAVID L · 2011 to 2015
$771k
Howard Hughes Medical InstituteNHLBI NIH HHS R01 HL048801NIDDK NIH HHS K01 DK087814NIDDK NIH HHS K01-DK087814-01A1NIDDK NIH HHS U54 DK110805
6 · The paper itself

Abstract

This protocol describes the ex vivo characterization of zebrafish hematopoietic progenitors. We show how to isolate zebrafish hematopoietic cells for cultivation and differentiation in colony assays in semi-solid media. We also describe procedures for the generation of recombinant zebrafish cytokines and for the isolation of carp serum, which are essential components of the medium required to grow zebrafish hematopoietic cells ex vivo. The outcome of these clonal assays can easily be evaluated using standard microscopy techniques after 3-10 d in culture. In addition, we describe how to isolate individual colonies for further imaging and gene expression profiling. In other vertebrate model organisms, ex vivo assays have been crucial for elucidating the relationships among hematopoietic stem cells (HSCs), progenitor cells and their mature progeny. The present protocol should facilitate such studies on cells derived from zebrafish.

Indexed as

HematopoiesisAnimalsCarpsCell Culture TechniquesCulture MediaCytokinesGene Expression ProfilingHematopoietic Stem CellsMolecular BiologyRecombinant ProteinsZebrafishZebrafish ProteinsCulture MediaCytokinesRecombinant ProteinsZebrafish Proteins

Identifiers

PMID27123951
PMCPMC5560128
OpenAlexW2344496212

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.