Evidence map›Paper›PMID 27123044›Full record

ArticleMolecular cytogenetics2016

The major horse satellite DNA family is associated with centromere competence.

Federico Cerutti, Riccardo Gamba, Alice Mazzagatti, Francesca M Piras, Eleonora Cappelletti, Elisa Belloni, Solomon G Nergadze, Elena Raimondi, Elena Giulotto

Open access · goldAbstract read
In one paragraph

Article in Molecular cytogenetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. CENP-A and centromere evolution in equids.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  6. Article
  7. Review
  8. Article
  9. A Satellite-Free Centromere inInternational journal of molecular sciences · 2023
    Article
  10. Article
  11. Molecular Dynamics and Evolution of Centromeres in the Genus Equus.International journal of molecular sciences · 2022
    Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Satellite DNA evolution: old ideas, new approaches.Current opinion in genetics & development · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Federico Cerutti *Dipartimento di Biologia e Biotecnologie, Università di Pavia, Via Ferrata 1, 27100 Pavia, Italy.
Riccardo Gamba *Dipartimento di Biologia e Biotecnologie, Università di Pavia, Via Ferrata 1, 27100 Pavia, Italy.
Alice Mazzagatti *Dipartimento di Biologia e Biotecnologie, Università di Pavia, Via Ferrata 1, 27100 Pavia, Italy.
Francesca M PirasDipartimento di Biologia e Biotecnologie, Università di Pavia, Via Ferrata 1, 27100 Pavia, Italy.
Eleonora CappellettiDipartimento di Biologia e Biotecnologie, Università di Pavia, Via Ferrata 1, 27100 Pavia, Italy.
Elisa BelloniDipartimento di Biologia e Biotecnologie, Università di Pavia, Via Ferrata 1, 27100 Pavia, Italy.
Solomon G NergadzeDipartimento di Biologia e Biotecnologie, Università di Pavia, Via Ferrata 1, 27100 Pavia, Italy.
Elena RaimondiDipartimento di Biologia e Biotecnologie, Università di Pavia, Via Ferrata 1, 27100 Pavia, Italy.
Elena GiulottoDipartimento di Biologia e Biotecnologie, Università di Pavia, Via Ferrata 1, 27100 Pavia, Italy.
University of Pavia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe centromere is the specialized locus required for correct chromosome segregation during cell division. The DNA of most eukaryotic centromeres is composed of extended arrays of tandem repeats (satellite DNA). In the horse, we previously showed that, although the centromere of chromosome 11 is completely devoid of tandem repeat arrays, all other centromeres are characterized by the presence of satellite DNA. We isolated three horse satellite DNA sequences (37cen, 2P1 and EC137) and described their chromosomal localization in four species of the genus Equus.

resultsIn the work presented here, using the ChIP-seq methodology, we showed that, in the horse, the 37cen satellite binds CENP-A, the centromere-specific histone-H3 variant. The 37cen sequence bound by CENP-A is GC-rich with 221 bp units organized in a head-to-tail fashion. The physical interaction of CENP-A with 37cen was confirmed through slot blot experiments. Immuno-FISH on stretched chromosomes and chromatin fibres demonstrated that the extension of satellite DNA stretches is variable and is not related to the organization of CENP-A binding domains. Finally, we proved that the centromeric satellite 37cen is transcriptionally active.

conclusionsOur data offer new insights into the organization of horse centromeres. Although three different satellite DNA families are cytogenetically located at centromeres, only the 37cen family is associated to the centromeric function. Moreover, similarly to other species, CENP-A binding domains are variable in size. The transcriptional competence of the 37cen satellite that we observed adds new evidence to the hypothesis that centromeric transcripts may be required for centromere function.

Indexed as

CentromereHigh resolution cytogeneticsHorse genomeNext generation sequencingSatellite DNA

Identifiers

PMID27123044
PMCPMC4847189
OpenAlexW2344606475

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.