Evidence map›Paper›PMID 27122568›Full record

ArticleProceedings. Biological sciences2016

Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence.

Robert A Quinn, Mark J A Vermeij, Aaron C Hartmann, Ines Galtier d'Auriac, Sean Benler, Andreas Haas, Steven D Quistad, Yan Wei Lim, Mark Little, Stuart Sandin and 3 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings. Biological sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 87 citations in OpenAlex.

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  14. Metabolomics on the study of marine organisms.Metabolomics : Official journal of the Metabolomic Society · 2022
    Review
  15. Article
  16. Article
  17. Intraspecific variation in polar and nonpolar metabolite profiles of a threatened Caribbean coral.Metabolomics : Official journal of the Metabolomic Society · 2021
    Article
  18. Metabolomic signatures of coral bleaching history.Nature ecology & evolution · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Robert A QuinnBiology Department, San Diego State University, San Diego, CA, USA Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California at San Diego, La Jolla, CA, USA rquinn@ucsd.edu.ORCID http://orcid.org/0000-0002-9829-3256
Mark J A VermeijCarmabi Foundation, Piscaderabaai, Willemstad, Curaçao Aquatic Microbiology, Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Amsterdam, The Netherlands.
Aaron C HartmannBiology Department, San Diego State University, San Diego, CA, USA National Museum of Natural History, Smithsonian Institution, Washington, DC, USA.
Ines Galtier d'AuriacBiology Department, San Diego State University, San Diego, CA, USA.
Sean BenlerBiology Department, San Diego State University, San Diego, CA, USA.
Andreas HaasBiology Department, San Diego State University, San Diego, CA, USA.
Steven D QuistadBiology Department, San Diego State University, San Diego, CA, USA.
Yan Wei LimBiology Department, San Diego State University, San Diego, CA, USA.
Mark LittleBiology Department, San Diego State University, San Diego, CA, USA.
Stuart SandinScripps Institution of Oceanography, University of California at San Diego, La Jolla, CA, USA.
Jennifer E SmithScripps Institution of Oceanography, University of California at San Diego, La Jolla, CA, USA.
Pieter C DorresteinCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California at San Diego, La Jolla, CA, USA.
Forest RohwerBiology Department, San Diego State University, San Diego, CA, USA.
San Diego State University · USScripps Institution of Oceanography · USCaribbean Research and Management of Biodiversity Foundation · CWSmithsonian Institution · USUniversity of Montana · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Holobionts are assemblages of microbial symbionts and their macrobial host. As extant representatives of some of the oldest macro-organisms, corals and algae are important for understanding how holobionts develop and interact with one another. Using untargeted metabolomics, we show that non-self interactions altered the coral metabolome more than self-interactions (i.e. different or same genus, respectively). Platelet activating factor (PAF) and Lyso-PAF, central inflammatory modulators in mammals, were major lipid components of the coral holobionts. When corals were damaged during competitive interactions with algae, PAF increased along with expression of the gene encoding Lyso-PAF acetyltransferase; the protein responsible for converting Lyso-PAF to PAF. This shows that self and non-self recognition among some of the oldest extant holobionts involve bioactive lipids identical to those in highly derived taxa like humans. This further strengthens the hypothesis that major players of the immune response evolved during the pre-Cambrian.

Indexed as

Coral ReefsAnimalsAnthozoaBiological EvolutionLipidsMetabolomicsModels, BiologicalPlatelet Activating FactorRhodophytaSymbiosisTranscriptomeLipidsO-deacetyl platelet activating factorPlatelet Activating Factorcoralmass spectrometrymetabolomicsplatelet activating factor

Identifiers

PMID27122568
PMCPMC4855392
OpenAlexW2344656406

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.