Evidence map›Paper›PMID 27122015›Full record

ArticleGenome biology2016

Epigenetic assimilation in the aging human brain.

Gabriel Oh, Sasha Ebrahimi, Sun-Chong Wang, Rene Cortese, Zachary A Kaminsky, Irving I Gottesman, James R Burke, Brenda L Plassman, Art Petronis

Open access · goldAbstract readTwin Study
In one paragraph

Article in Genome biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Aging, Neurodegenerative Disorders, and Cerebellum.International journal of molecular sciences · 2024
    Review
  6. Review
  7. Review
  8. Making sense of the ageing methylome.Nature reviews. Genetics · 2022
    Review
  9. Article
  10. Review
  11. Article
  12. Epigenetic Mechanisms of Learning and Memory: Implications for Aging.International journal of molecular sciences · 2020
    Review
  13. Nutritional Epigenomics and Age-Related Disease.Current developments in nutrition · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Gabriel OhKrembil Family Epigenetics Laboratory, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, 250 College St. R130, Toronto, Ontario, M5T 1R8, Canada.
Sasha EbrahimiKrembil Family Epigenetics Laboratory, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, 250 College St. R130, Toronto, Ontario, M5T 1R8, Canada.
Sun-Chong WangInstitute of Systems Biology and Bioinformatics, National Central University, Chungli, 320, Taiwan.
Rene CorteseKrembil Family Epigenetics Laboratory, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, 250 College St. R130, Toronto, Ontario, M5T 1R8, Canada.
Zachary A KaminskyDepartment of Psychiatry and Behavioral Sciences, School of Medicine, Johns Hopkins University, Baltimore, Maryland, 21287, USA.
Irving I GottesmanDepartments of Psychology and Psychiatry, University of Minnesota, Minneapolis, Minnesota, 55455, USA.
James R BurkeDuke University Medical Center, Duke University, Box 2900, Durham, North Carolina, 27701, USA.
Brenda L PlassmanDuke University Medical Center, Duke University, Box 41, Durham, North Carolina, 27701, USA.
Art PetronisKrembil Family Epigenetics Laboratory, Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, 250 College St. R130, Toronto, Ontario, M5T 1R8, Canada. art.petronis@camh.ca.
Centre for Addiction and Mental Health · CADuke Medical Center · USJohns Hopkins University · USNational Central University · TWUniversity of Minnesota · US

Funding

GENETIC EPIDEMIOLOGY OF ALZHEIMER'S DISEASE IN TWINSR01AG008549 · NIA · DUKE UNIVERSITY · PI PLASSMAN, BRENDA L · 1989 to 2003
$4.2M
DNA METHYLOME ANALYSIS IN BIPOLAR DISORDERR01MH088413 · NIMH · CENTRE FOR ADDICTION AND MENTAL HEALTH · PI PETRONIS, ART · 2009 to 2013
$4.1M
DNA METHYLOME STUDY IN TYPE 1 DIABETESDP3DK085698 · NIDDK · CENTRE FOR ADDICTION AND MENTAL HEALTH · PI PETRONIS, ART · 2009 to 2009
$3.1M
Canadian Institutes of Health Research MOP-119451Canadian Institutes of Health Research MOP-199170Canadian Institutes of Health Research MOP-77689NIA NIH HHS AG-08549NIA NIH HHS R01 AG008549NIDDK NIH HHS DK085698NIDDK NIH HHS DP3 DK085698NIMH NIH HHS MH088413NIMH NIH HHS R01 MH088413
6 · The paper itself

Abstract

backgroundEpigenetic drift progressively increases variation in DNA modification profiles of aging cells, but the finale of such divergence remains elusive. In this study, we explored the dynamics of DNA modification and transcription in the later stages of human life.

resultsWe find that brain tissues of older individuals (>75 years) become more similar to each other, both epigenetically and transcriptionally, compared with younger individuals. Inter-individual epigenetic assimilation is concurrent with increasing similarity between the cerebral cortex and the cerebellum, which points to potential brain cell dedifferentiation. DNA modification analysis of twins affected with Alzheimer's disease reveals a potential for accelerated epigenetic assimilation in neurodegenerative disease. We also observe loss of boundaries and merging of neighboring DNA modification and transcriptomic domains over time.

conclusionsAge-dependent epigenetic divergence, paradoxically, changes to convergence in the later stages of life. The newly described phenomena of epigenetic assimilation and tissue dedifferentiation may help us better understand the molecular mechanisms of aging and the origins of diseases for which age is a risk factor.

Indexed as

Epigenesis, GeneticAgedAged, 80 and overAlzheimer DiseaseDNA MethylationFemaleFrontal LobeHumansMaleMiddle AgedTwinsAgingAlzheimer’s diseaseDedifferentiationDNA methylationEpigenetic driftEpigeneticsGenomic organizationTranscriptome

Identifiers

PMID27122015
PMCPMC4848814
OpenAlexW2344225301

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.