Evidence map›Paper›PMID 27121347›Full record

ArticleJournal of clinical laboratory analysis2016

Comparison of Three Different Commercial Kits for the Human Papilloma Virus Genotyping.

Yong Kwan Lim, Jee-Hye Choi, Serah Park, Oh Joo Kweon, Ae Ja Park

Open access · bronzeAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Evaluation of HPV-related oral cancer using DNA microarray technology according to the 8th edition of the AJCC staging system.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2022
    Article
  3. Article
  4. Article
  5. PCR-RFLP assay as an option for primary HPV test.Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica · 2018
    Article
  6. Identification of human papillomavirus (HPV) subtype in oral cancer patients through microarray technology.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2018
    Article
  7. Letter to editor: Current and future techniques for human papilloma virus (HPV) testing in oropharyngeal squamous cell carcinoma.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2017
    Article
  8. Microarray technology for identification of human papilloma virus subtype in oropharyngeal squamous cell carcinoma.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2017
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yong Kwan LimDepartment of Laboratory Medicine, Chung-Ang University College of Medicine, Seoul, Korea.
Jee-Hye ChoiDepartment of Laboratory Medicine, Chung-Ang University College of Medicine, Seoul, Korea.
Serah ParkDepartment of Laboratory Medicine, Chung-Ang University College of Medicine, Seoul, Korea.
Oh Joo KweonDepartment of Laboratory Medicine, Chung-Ang University College of Medicine, Seoul, Korea.
Ae Ja ParkDepartment of Laboratory Medicine, Chung-Ang University College of Medicine, Seoul, Korea. ajcp@unitel.co.kr.
Chung-Ang University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHigh-risk type human papilloma virus (HPV) is the most important cause of cervical cancer. Recently, real-time polymerase chain reaction and reverse blot hybridization assay-based HPV DNA genotyping kits are developed. So, we compared the performances of different three HPV genotyping kits using different analytical principles and methods.

methodsTwo hundred positive and 100 negative cervical swab specimens were used. DNA was extracted and all samples were tested by the MolecuTech REBA HPV-ID, Anyplex II HPV28 Detection, and HPVDNAChip. Direct sequencing was performed as a reference method for confirming high-risk HPV genotypes 16, 18, 45, 52, and 58.

resultsAlthough high-level agreement results were observed in negative samples, three kits showed decreased interassay agreement as screening setting in positive samples. Comparing the genotyping results, three assays showed acceptable sensitivity and specificity for the detection of HPV 16 and 18. Otherwise, various sensitivities showed in the detection of HPV 45, 52, and 58.

conclusionsThe three assays had dissimilar performance of HPV screening capacity and exhibited moderate level of concordance in HPV genotyping. These discrepant results were unavoidable due to difference in type-specific analytical sensitivity and lack of standardization; therefore, we suggested that the efforts to standardization of HPV genotyping kits and adjusting analytical sensitivity would be important for the best clinical performance.

Indexed as

AdultFemaleGene Expression ProfilingGenotypeHumansMaleMiddle AgedOligonucleotide Array Sequence AnalysisPapillomaviridaePapillomavirus InfectionsReagent Kits, DiagnosticReal-Time Polymerase Chain ReactionRetrospective StudiesSensitivity and SpecificityYoung AdultReagent Kits, Diagnosticcomparisongenotypinghuman papilloma virus

Identifiers

PMID27121347
PMCPMC6807108
OpenAlexW2342790879

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.