Evidence map›Paper›PMID 27120335›Full record

ArticlePloS one2016

Genetic Candidate Variants in Two Multigenerational Families with Childhood Apraxia of Speech.

Beate Peter, Ellen M Wijsman, Alejandro Q Nato, University of Washington Center for Mendelian Genomics, Mark M Matsushita, Kathy L Chapman, Ian B Stanaway, John Wolff, Kaori Oda, Virginia B Gabo and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
7.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 60 citations in OpenAlex.

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  17. A Psycholinguistic Framework for Diagnosis and Treatment Planning of Developmental Speech Disorders.Folia phoniatrica et logopaedica : official organ of the International Association of Logopedics and Phoniatrics (IALP) · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Beate PeterDpt. of Speech and Hearing Sciences, Arizona State University, Tempe, Arizona, United States of America.ORCID 0000-0002-9083-8522
Ellen M WijsmanDiv. of Medical Genetics, Dpt. of Medicine, University of Washington, Seattle, Washington, United States of America.
Alejandro Q NatoDiv. of Medical Genetics, Dpt. of Medicine, University of Washington, Seattle, Washington, United States of America.
University of Washington Center for Mendelian Genomics
Mark M MatsushitaDiv. of Medical Genetics, Dpt. of Medicine, University of Washington, Seattle, Washington, United States of America.
Kathy L ChapmanDpt. of Communication Sciences and Disorders, University of Utah, Salt Lake City, Utah, United States of America.
Ian B StanawayDpt. of Environmental and Occupational Health, Environmental Toxicology, University of Washington, Seattle, Washington, United States of America.
John WolffDiv. of Medical Genetics, Dpt. of Medicine, University of Washington, Seattle, Washington, United States of America.
Kaori OdaDiv. of Medical Genetics, Dpt. of Medicine, University of Washington, Seattle, Washington, United States of America.
Virginia B GaboDiv. of Medical Genetics, Dpt. of Medicine, University of Washington, Seattle, Washington, United States of America.
Wendy H RaskindDiv. of Medical Genetics, Dpt. of Medicine, University of Washington, Seattle, Washington, United States of America.
University of Washington Medical Center · USUniversity of Washington · USUniversity of Utah · US

Funding

UW Center for Mendelian GenomicsU54HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2012 to 2015
$20.0M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
Biostatistics, Epidemiologic & Bioinformatic Training in Environmental HealthT32ES015459 · NIEHS · UNIVERSITY OF WASHINGTON · PI June T. Spector · 2009 to 2026
$10.6M
STUDY OF CELLULAR &MOLECULAR ASPECTS OF PESTICIDE NEURODEVELOPMENTAL TOXICITYP01ES009601 · NIEHS · UNIVERSITY OF WASHINGTON · PI FAUSTMAN, ELAINE M · 1999 to 2013
$8.7M
Training Program in Hearing and BalanceT32DC000033 · NIDCD · UNIVERSITY OF WASHINGTON · PI WERNER, LYNNE A. · 1991 to 2015
$3.9M
Diversity Action Plan: UW GenOM ProjectR25HG007153 · NHGRI · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 2013 to 2020
$2.3M
Genetics Contributions to Endophenotypes of DyslexiaR01HD054562 · NICHD · UNIVERSITY OF WASHINGTON · PI RASKIND, WENDY H · 2007 to 2011
$1.8M
2/3 Sequencing Autism Spectrum Disorder Extended PedigreesR01MH094293 · NIMH · UNIVERSITY OF WASHINGTON · PI WIJSMAN, ELLEN M · 2012 to 2016
$1.1M
Genetics of speech disordersR03DC010886 · NIDCD · UNIVERSITY OF WASHINGTON · PI PETER, BEATE · 2011 to 2013
$460k
NHGRI NIH HHS R25 HG007153NHGRI NIH HHS U54 HG006493NHGRI NIH HHS UM1 HG006493NICHD NIH HHS R01 HD054562NIDCD NIH HHS R03 DC010886NIDCD NIH HHS T32 DC000033NIEHS NIH HHS P01 ES009601NIEHS NIH HHS T32 ES015459NIMH NIH HHS R01 MH094293
6 · The paper itself

Abstract

Childhood apraxia of speech (CAS) is a severe and socially debilitating form of speech sound disorder with suspected genetic involvement, but the genetic etiology is not yet well understood. Very few known or putative causal genes have been identified to date, e.g., FOXP2 and BCL11A. Building a knowledge base of the genetic etiology of CAS will make it possible to identify infants at genetic risk and motivate the development of effective very early intervention programs. We investigated the genetic etiology of CAS in two large multigenerational families with familial CAS. Complementary genomic methods included Markov chain Monte Carlo linkage analysis, copy-number analysis, identity-by-descent sharing, and exome sequencing with variant filtering. No overlaps in regions with positive evidence of linkage between the two families were found. In one family, linkage analysis detected two chromosomal regions of interest, 5p15.1-p14.1, and 17p13.1-q11.1, inherited separately from the two founders. Single-point linkage analysis of selected variants identified CDH18 as a primary gene of interest and additionally, MYO10, NIPBL, GLP2R, NCOR1, FLCN, SMCR8, NEK8, and ANKRD12, possibly with additive effects. Linkage analysis in the second family detected five regions with LOD scores approaching the highest values possible in the family. A gene of interest was C4orf21 (ZGRF1) on 4q25-q28.2. Evidence for previously described causal copy-number variations and validated or suspected genes was not found. Results are consistent with a heterogeneous CAS etiology, as is expected in many neurogenic disorders. Future studies will investigate genome variants in these and other families with CAS.

Indexed as

ApraxiasDNA Copy Number VariationsExomeFemaleGenetic LinkageGenetic Predisposition to DiseaseGenotypeHumansLod ScoreMalePedigreeRiskSpeech

Identifiers

PMID27120335
PMCPMC4847873
OpenAlexW2344720489

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.