Evidence map›Paper›PMID 27118868›Full record

ArticleThe Biochemical journal2016

A polybasic motif in ErbB3-binding protein 1 (EBP1) has key functions in nucleolar localization and polyphosphoinositide interaction.

Thomas Karlsson, Altanchimeg Altankhuyag, Olena Dobrovolska, Diana C Turcu, Aurélia E Lewis

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Non-Vesicular Lipid Transport Machinery inInternational journal of molecular sciences · 2023
    Review
  6. PI3Kα Translocation Mediates Nuclear PtdIns(3,4,5)PMolecular & cellular proteomics : MCP · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Systematic Screen forG3 (Bethesda, Md.) · 2020
    Article
  11. Article
  12. Review
  13. Article
  14. The nuclear phosphoinositide response to stress.Cell cycle (Georgetown, Tex.) · 2020
    Review
  15. Article
  16. Review
  17. Class I Phosphoinositide 3-KinaseInternational journal of molecular sciences · 2018
    Review
  18. Non-vesicular Lipid Transport Machinery inFrontiers in cellular and infection microbiology · 2018
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Thomas KarlssonNucReg Research Program, Department of Molecular Biology, University of Bergen, 5008 Bergen, Norway.
Altanchimeg AltankhuyagNucReg Research Program, Department of Molecular Biology, University of Bergen, 5008 Bergen, Norway.
Olena DobrovolskaNucReg Research Program, Department of Molecular Biology, University of Bergen, 5008 Bergen, Norway.
Diana C TurcuNucReg Research Program, Department of Molecular Biology, University of Bergen, 5008 Bergen, Norway.
Aurélia E LewisNucReg Research Program, Department of Molecular Biology, University of Bergen, 5008 Bergen, Norway aurelia.lewis@uib.no.
University of Bergen · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polyphosphoinositides (PPIns) are present in the nucleus where they participate in crucial nuclear processes, such as chromatin remodelling, transcription and mRNA processing. In a previous interactomics study, aimed to gain further insight into nuclear PPIns functions, we identified ErbB3 binding protein 1 (EBP1) as a potential nuclear PPIn-binding protein in a lipid pull-down screen. EBP1 is a ubiquitous and conserved protein, located in both the cytoplasm and nucleolus, and associated with cell proliferation and survival. In the present study, we show that EBP1 binds directly to several PPIns via two distinct PPIn-binding sites consisting of clusters of lysine residues and positioned at the N- and C-termini of the protein. Using interaction mutants, we show that the C-terminal PPIn-binding motif contributes the most to the localization of EBP1 in the nucleolus. Importantly, a K372N point mutation, located within the C-terminal motif and found in endometrial tumours, is sufficient to alter the nucleolar targeting of EBP1. Our study reveals also the presence of the class I phosphoinositide 3-kinase (PI3K) catalytic subunit p110β and its product PtdIns(3,4,5)P3 together with EBP1 in the nucleolus. Using NMR, we further demonstrate an association between EBP1 and PtdIns(3,4,5)P3 via both electrostatic and hydrophobic interactions. Taken together, these results show that EBP1 interacts directly with PPIns and associate with PtdIns(3,4,5)P3 in the nucleolus. The presence of p110β and PtdIns(3,4,5)P3 in the nucleolus indicates their potential role in regulating nucleolar processes, at least via EBP1.

Indexed as

Adaptor Proteins, Signal TransducingAnimalsCell Line, TumorCell NucleolusCell NucleusDNA-Binding ProteinsHumansLysineMagnetic Resonance SpectroscopyMiceMutationNuclear ProteinsPhosphatidylinositol PhosphatesProtein BindingRNA-Binding ProteinsAdaptor Proteins, Signal TransducingDNA-Binding ProteinsLysineNuclear ProteinsPA2G4 protein, humanPa2g4 protein, mousephosphatidylinositol 3,4,5-triphosphatePhosphatidylinositol PhosphatesRNA-Binding ProteinsEBP1interactionnucleolusp110βPI3KPIP3

Identifiers

PMID27118868
PMCPMC4941749
OpenAlexW2342414857

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.