Evidence map›Paper›PMID 27118345›Full record

ArticleScientific reports2016

Transcriptome analysis of interactions between silkworm and cytoplasmic polyhedrosis virus.

Liang Jiang, Zhengwen Peng, Youbing Guo, Tingcai Cheng, Huizhen Guo, Qiang Sun, Chunlin Huang, Ping Zhao, Qingyou Xia

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 41 citations in OpenAlex.

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  13. Distinct Functions ofFrontiers in immunology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Liang JiangState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, P. R. China.
Zhengwen PengState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, P. R. China.
Youbing GuoState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, P. R. China.
Tingcai ChengState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, P. R. China.
Huizhen GuoState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, P. R. China.
Qiang SunState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, P. R. China.
Chunlin HuangState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, P. R. China.
Ping ZhaoState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, P. R. China.
Qingyou XiaState Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing 400715, P. R. China.
Southwest University · CNState Key Laboratory of Silkworm Genomic Biology

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bombyx mori cytoplasmic polyhedrosis virus (BmCPV) specifically infects silkworm midgut (MG) and multiplication occurs mainly in posterior midgut (PM). In this study, MG and fat body (FB) were extracted at 0, 3, 24, and 72 h after BmCPV infection. The total sequence reads of each sample were more than 1510000, and the mapping ratio exceeded 95.3%. Upregulated transcripts increased in MG during the infection process. Gene ontology (GO) categories showed that antioxidants were all upregulated in FB but not in MG. BGI001299, BGI014434, BGI012068, and BGI009201 were MG-specific genes with transmembrane transport function, the expression of which were induced by BmCPV. BGI001299, BGI014434, and BGI012068 expressed in entire MG and may be involved in BmCPV invasion. BGI009201 expressed only in PM and may be necessary for BmCPV proliferation. BmPGRP-S2 and BGI012452 (a putative serine protease) were induced by BmCPV and may be involved in immune defense against BmCPV. The expression level of BmCPV S1, S2, S3, S6, and S7 was high and there was no expression of S9 in MG 72 h, implying that the expression time of structural protein coding genes is earlier. These results provide insights into the mechanism of BmCPV infection and host defense.

Indexed as

Gene Expression ProfilingHost-Pathogen InteractionsAnimalsBombyxFat BodyGastrointestinal TractReoviridae

Identifiers

PMID27118345
PMCPMC4847007
OpenAlexW2344898050

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.