Evidence map›Paper›PMID 27117914›Full record

ArticleNature communications2016

A cell cycle kinase with tandem sensory PAS domains integrates cell fate cues.

Thomas H Mann, W Seth Childers, Jimmy A Blair, Michael R Eckart, Lucy Shapiro

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. TheJournal of bacteriology · 2024
    Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Glutathione Synthesis Regulated by CtrA ProtectsFrontiers in microbiology · 2022
    Article
  14. Article
  15. Review
  16. PAS domains in bacterial signal transduction.Current opinion in microbiology · 2021
    Review
  17. A localized adaptor protein performs distinct functions at theProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  18. The Future Potential of Biosensors to Investigate the Gut-Brain Axis.Frontiers in bioengineering and biotechnology · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Thomas H MannDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, California 94305, USA.
W Seth ChildersDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, California 94305, USA.
Jimmy A BlairDepartment of Chemistry, Williams College, Williamstown, Massachusetts 01267, USA.
Michael R EckartStanford Protein and Nucleic Acid Facility, Beckman Center, Stanford University School of Medicine, Stanford, California 94305, USA.
Lucy ShapiroDepartment of Developmental Biology, Stanford University School of Medicine, Stanford, California 94305, USA.
Stanford University · USWilliams College · US

Funding

Supplement to Enhance Wellness and Resiliency in the Graduate EnvironmentT32GM007276 · NIGMS · STANFORD UNIVERSITY · PI MORRISON, ASHBY J. · 1985 to 2023
$32.9M
REGULATION OF DIFFERENTIATION IN CAULOBACTERR01GM032506 · NIGMS · YESHIVA UNIVERSITY · PI SHAPIRO, LUCILLE · 1985 to 2014
$7.1M
Integration of regulatory networks and subcellular architecture to control the Caulobacter cell cycleR35GM118071 · NIGMS · STANFORD UNIVERSITY · PI SHAPIRO, LUCILLE · 2016 to 2020
$3.2M
NIGMS NIH HHS R01 GM032506NIGMS NIH HHS R35 GM118071NIGMS NIH HHS T32 GM007276
6 · The paper itself

Abstract

All cells must integrate sensory information to coordinate developmental events in space and time. The bacterium Caulobacter crescentus uses two-component phospho-signalling to regulate spatially distinct cell cycle events through the master regulator CtrA. Here, we report that CckA, the histidine kinase upstream of CtrA, employs a tandem-PAS domain sensor to integrate two distinct spatiotemporal signals. Using CckA reconstituted on liposomes, we show that one PAS domain modulates kinase activity in a CckA density-dependent manner, mimicking the stimulation of CckA kinase activity that occurs on its transition from diffuse to densely packed at the cell poles. The second PAS domain interacts with the asymmetrically partitioned second messenger cyclic-di-GMP, inhibiting kinase activity while stimulating phosphatase activity, consistent with the selective inactivation of CtrA in the incipient stalked cell compartment. The integration of these spatially and temporally regulated signalling events within a single signalling receptor enables robust orchestration of cell-type-specific gene regulation.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding SitesCaulobacter crescentusCell DivisionDNA-Binding ProteinsGene Expression Regulation, BacterialHistidine KinaseMicroscopy, FluorescencePhosphorylationProtein Serine-Threonine KinasesSignal TransductionTranscription FactorsBacterial ProteinsCtrA protein, CaulobacterDNA-Binding ProteinsHistidine KinasePAS domain kinasesProtein Serine-Threonine KinasesTranscription Factors

Identifiers

PMID27117914
PMCPMC4853435
OpenAlexW2342958208

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.