Evidence map›Paper›PMID 27117417›Full record

ArticleCell reports2016

Single-Molecule Imaging Reveals a Collapsed Conformational State for DNA-Bound Cohesin.

Johannes Stigler, Gamze Ö Çamdere, Douglas E Koshland, Eric C Greene

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 135 papers.

0numbers the graph read from it
0cells of the map it votes in
135citing papers in PubMed
22.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

135 citing papers in PubMed, 253 citations in OpenAlex.

  1. Review
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  5. NIPBL and STAG1 enable loop extrusion by providing differential DNA-cohesin affinity.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  19. Transcription shapes 3D chromatin organization by interacting with loop extrusion.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  20. Article

75 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Johannes StiglerDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA.
Gamze Ö ÇamdereDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Douglas E KoshlandDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA. Electronic address: koshland@berkeley.edu.
Eric C GreeneDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA. Electronic address: ecg2108@cumc.columbia.edu.
Columbia University · USUniversity of California, Berkeley · US

Funding

Elucidating chromosome structure and function through the lens of SMC complexes and R-loopsR35GM118189 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KOSHLAND, DOUGLAS E · 2016 to 2025
$7.1M
Protein purification instrumentation in support of single molecule studies of genome integrityR35GM118026 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GREENE, ERIC C · 2016 to 2025
$5.7M
Elucidating the Mechanisms of DNA RecombinationR01GM074739 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GREENE, ERIC C · 2006 to 2015
$2.7M
Visualizing the Dynamics of Chromatin and Chromatin Remodeling ProteinsR01GM082848 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GREENE, ERIC C · 2008 to 2016
$2.4M
Establishment of sister chromatid cohesionR01GM092813 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KOSHLAND, DOUGLAS E · 2010 to 2015
$2.2M
Mechanism of Energy Transduction and Substrate Activation in Biological NitrogenR01GM099813 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TEZCAN, FAIK AKIF · 2012 to 2016
$1.3M
NIGMS NIH HHS R01 GM074739NIGMS NIH HHS R01 GM082848NIGMS NIH HHS R01 GM092813NIGMS NIH HHS R01 GM099813NIGMS NIH HHS R35 GM118026NIGMS NIH HHS R35 GM118189
6 · The paper itself

Abstract

Cohesin is essential for the hierarchical organization of the eukaryotic genome and plays key roles in many aspects of chromosome biology. The conformation of cohesin bound to DNA remains poorly defined, leaving crucial gaps in our understanding of how cohesin fulfills its biological functions. Here, we use single-molecule microscopy to directly observe the dynamic and functional characteristics of cohesin bound to DNA. We show that cohesin can undergo rapid one-dimensional (1D) diffusion along DNA, but individual nucleosomes, nucleosome arrays, and other protein obstacles significantly restrict its mobility. Furthermore, we demonstrate that DNA motor proteins can readily push cohesin along DNA, but they cannot pass through the interior of the cohesin ring. Together, our results reveal that DNA-bound cohesin has a central pore that is substantially smaller than anticipated. These findings have direct implications for understanding how cohesin and other SMC proteins interact with and distribute along chromatin.

Indexed as

AT Rich SequenceBase SequenceCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsDiffusionDNAModels, BiologicalMolecular Motor ProteinsNucleosomesPorosityProtein BindingProtein ConformationProtein TransportSchizosaccharomycesSchizosaccharomyces pombe ProteinsCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsDNAMolecular Motor ProteinsNucleosomesSchizosaccharomyces pombe Proteins

Identifiers

PMID27117417
PMCPMC4856582
OpenAlexW2338485081

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.