Evidence map›Paper›PMID 27116958›Full record

ArticleWorld journal of microbiology & biotechnology2016

Braf, Kras and Helicobacter pylori epigenetic changes-associated chronic gastritis in Egyptian patients with and without gastric cancer.

Dina Sabry, Rasha Ahmed, Sayed Abdalla, Wael Fathy, Ahmed Eldemery, Azza Elamir

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in World journal of microbiology & biotechnology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Overview of MDM2 and B-RAF Expression in Gastric Lesions.Open access Macedonian journal of medical sciences · 2018
    Article
  6. Journal of Cancer · 2018
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Dina SabryMedical Biochemistry and Molecular Biology Department, Faculty of Medicine, Cairo University, Giza, Egypt. dinasabry@kasralainy.edu.eg.
Rasha AhmedEndemic Medicine & Hepatology Department, Faculty of Medicine, Cairo University, Giza, Egypt.
Sayed AbdallaInternal Medicine Department, Faculty of Medicine, Cairo University, Giza, Egypt.
Wael FathyMedical Biochemistry and Molecular Biology Department, Faculty of Medicine, Cairo University, Giza, Egypt.
Ahmed EldemeryMedical Biochemistry Department, Faculty of Medicine, October 6 University, Giza, Egypt.
Azza ElamirMedical Biochemistry Department, Faculty of Medicine, El Fayoum University, Al Fayoum, Egypt.
Cairo University · EGFayoum University · EGOctober 6 University · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledWe aimed to study MLH1 and MGMT methylation status in Helicobacter pylori-associated chronic gastritis in Egyptian patients with and without gastric cancer. 39 patients were included in our study. They were divided into 2 groups; patients without (group I) and with gastric adenocarcinoma (group II). Patients were subjected to clinical examination, abdominal ultrasound and upper endoscopy for gastric biopsy. Biopsies were subjected to urease test, histological examination, and DNA purification. H. pylori, Braf, Kras, MLH1 and MGMT methylation were assessed by quantitative PCR. DNA sequencing was performed to assess Braf and Kras genes mutation. qPCR of H. pylori was significantly higher in patients with adenocarcinoma (group II) than those without adenocarcinoma (group I); with a p < 0.001 as well as in patients with age above 50 years with a p value = 0.008. By applying logistic regression analysis it was reported that the H. pylori qPCR is a significant predictor to the adenocarcinoma with OR = 1.025 (95 % CI: 1. 002-1.048), with sensitivity of 90 % and specificity of 100 %. Adenocarcinoma patients had a significantly higher mean age and levels of H. Pylori, Braf, K-ras, methylated MGMT and methylated MLH1 than those of gastritis patients. DNA sequence analysis of Braf (codon 12) and Kras (codon 600) had genes mutation in gastric adenocarcinoma versus chronic gastritis.

conclusionH. pylori may cause epigenetic changes predisposing the patients to cancer stomach. Estimation of H. pylori by qPCR can be a good predictor to adenocarcinoma. Braf and Kras genes mutation were reveled in gastritis and adenocarcinoma patients.

Indexed as

AdenocarcinomaAdultAgedChronic DiseaseDNA MethylationDNA Modification MethylasesDNA Repair EnzymesEgyptEpigenesis, GeneticFemaleGastritisGene Expression ProfilingHelicobacter InfectionsHelicobacter pyloriHumansMaleBRAF protein, humanDNA Modification MethylasesDNA Repair EnzymesKRAS protein, humanMGMT protein, humanMLH1 protein, humanMutL Protein Homolog 1Proto-Oncogene Proteins B-rafProto-Oncogene Proteins p21(ras)Tumor Suppressor ProteinsBrafEpigeneticsH.pyloriKras

Identifiers

PMID27116958
OpenAlexW4240198818

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.