Evidence map›Paper›PMID 27116338›Full record

ArticleMolecular microbiology2016

A spectrum of CodY activities drives metabolic reorganization and virulence gene expression in Staphylococcus aureus.

Nicholas R Waters, David J Samuels, Ranjan K Behera, Jonathan Livny, Kyu Y Rhee, Marat R Sadykov, Shaun R Brinsmade

Open access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
  2. InJournal of bacteriology · 2026
    Article
  3. mBio · 2026
    Article
  4. Article
  5. InbioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Response ofJournal of bacteriology · 2024
    Article
  14. Mutations in thebioRxiv : the preprint server for biology · 2024
    Article
  15. Article
  16. Article
  17. Loratadine Combats Methicillin-ResistantACS infectious diseases · 2024
    Article
  18. Article
  19. Article
  20. Review

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Nicholas R WatersDepartment of Biology, Georgetown University, Washington, DC, USA.
David J SamuelsDepartment of Biology, Georgetown University, Washington, DC, USA.
Ranjan K BeheraDepartment of Biology, Georgetown University, Washington, DC, USA.
Jonathan LivnyBroad Institute of MIT and Harvard, Cambridge, MA, USA.
Kyu Y RheeDepartment of Medicine, Division of Infectious Diseases, Weill Cornell Medical College, New York, NY, USA.
Marat R SadykovDepartment of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA.
Shaun R BrinsmadeDepartment of Biology, Georgetown University, Washington, DC, USA.
Georgetown University · USBroad Institute · USCornell University · USUniversity of Nebraska Medical Center · US

Funding

ISOLATION OF EARLY SPORULATION GENESR01GM042219 · NIGMS · TUFTS UNIVERSITY BOSTON · PI SONENSHEIN, ABRAHAM LINCOLN · 1989 to 2015
$5.8M
Integrating Global Responses to Nutrient Limitation in Gram-positive BacteriaR00GM099893 · NIGMS · GEORGETOWN UNIVERSITY · PI BRINSMADE, SHAUN R · 2013 to 2015
$725k
Integrating Global Responses to Nutrient Limitation in Gram-positive BacteriaK99GM099893 · NIGMS · TUFTS UNIVERSITY BOSTON · PI BRINSMADE, SHAUN R · 2012 to 2012
$90k
NIGMS NIH HHS K99 GM099893NIGMS NIH HHS R00 GM099893NIGMS NIH HHS R01 GM042219
6 · The paper itself

Abstract

The global regulator CodY controls the expression of dozens of metabolism and virulence genes in the opportunistic pathogen Staphylococcus aureus in response to the availability of isoleucine, leucine and valine (ILV), and GTP. Using RNA-Seq transcriptional profiling and partial activity variants, we reveal that S. aureus CodY activity grades metabolic and virulence gene expression as a function of ILV availability, mediating metabolic reorganization and controlling virulence factor production in vitro. Strains lacking CodY regulatory activity produce a PIA-dependent biofilm, but development is restricted under conditions that confer partial CodY activity. CodY regulates the expression of thermonuclease (nuc) via the Sae two-component system, revealing cascading virulence regulation and factor production as CodY activity is reduced. Proteins that mediate the host-pathogen interaction and subvert the immune response are shut off at intermediate levels of CodY activity, while genes coding for enzymes and proteins that extract nutrients from tissue, that kill host cells, and that synthesize amino acids are among the last genes to be derepressed. We conclude that S. aureus uses CodY to limit host damage to only the most severe starvation conditions, providing insight into one potential mechanism by which S. aureus transitions from a commensal bacterium to an invasive pathogen.

Indexed as

Bacterial ProteinsBiofilmsHost-Pathogen InteractionsRepressor ProteinsStaphylococcus aureusVirulenceVirulence FactorsBacterial ProteinsCodY protein, Staphylococcus aureusRepressor ProteinsVirulence Factors

Identifiers

PMID27116338
PMCPMC5007081
OpenAlexW2343580886

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.