Evidence map›Paper›PMID 27114505›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Remarkably low affinity of CD4/peptide-major histocompatibility complex class II protein interactions.

Peter Jönsson, Jennifer H Southcombe, Ana Mafalda Santos, Jiandong Huo, Ricardo A Fernandes, James McColl, Melissa Lever, Edward J Evans, Alexander Hudson, Veronica T Chang and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 60 citations in OpenAlex.

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  9. The kinase occupancy of T cell coreceptors reconsidered.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  18. Trapping or slowing the diffusion of T cell receptors at close contacts initiates T cell signaling.Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 3 countries.

Peter JönssonDepartment of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom; Department of Chemistry, Lund University, SE-22100 Lund, Sweden;
Jennifer H SouthcombeMRC Human Immunology Unit, University of Oxford, Oxford OX3 9DS, United Kingdom; Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom; Nuffield Department of Obstetrics and Gynaecology, University of Oxford, Oxford OX3 9DU, United Kingdom;
Ana Mafalda SantosMRC Human Immunology Unit, University of Oxford, Oxford OX3 9DS, United Kingdom; Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom;
Jiandong HuoMRC Human Immunology Unit, University of Oxford, Oxford OX3 9DS, United Kingdom; Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom;
Ricardo A FernandesMRC Human Immunology Unit, University of Oxford, Oxford OX3 9DS, United Kingdom; Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom;
James McCollDepartment of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom;
Melissa LeverSir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, United Kingdom;
Edward J EvansMRC Human Immunology Unit, University of Oxford, Oxford OX3 9DS, United Kingdom; Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom;
Alexander HudsonMRC Human Immunology Unit, University of Oxford, Oxford OX3 9DS, United Kingdom; Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom;
Veronica T ChangMRC Human Immunology Unit, University of Oxford, Oxford OX3 9DS, United Kingdom; Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom;
Tomáš HankeMRC Human Immunology Unit, University of Oxford, Oxford OX3 9DS, United Kingdom;
Andrew GodkinDepartment of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, United Kingdom;
Paul D DunneDepartment of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom;
Mathew H HorrocksDepartment of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom;
Matthieu PalayretDepartment of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom;
Gavin R ScreatonMRC Human Immunology Unit, University of Oxford, Oxford OX3 9DS, United Kingdom;
Jan PetersenInfection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia; Australian Research Council Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton, VIC 3800, Australia;
Jamie RossjohnDepartment of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, United Kingdom; Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia; Australian Research Council Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton, VIC 3800, Australia;
Lars FuggerMRC Human Immunology Unit, University of Oxford, Oxford OX3 9DS, United Kingdom; Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom; Nuffield Department of Clinical Neurosciences, Division of Clinical Neurology, University of Oxford, Oxford OX3 9DS, United Kingdom.
Omer DushekSir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, United Kingdom;
Xiao-Ning XuMRC Human Immunology Unit, University of Oxford, Oxford OX3 9DS, United Kingdom; x.xu@imperial.ac.uk simon.davis@imm.ox.ac.uk dk10012@cam.ac.uk.
Simon J DavisMRC Human Immunology Unit, University of Oxford, Oxford OX3 9DS, United Kingdom; Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom; x.xu@imperial.ac.uk simon.davis@imm.ox.ac.uk dk10012@cam.ac.uk.
David KlenermanDepartment of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom; x.xu@imperial.ac.uk simon.davis@imm.ox.ac.uk dk10012@cam.ac.uk.
University of Oxford · GBUniversity of Cambridge · GBMRC Human Immunology Unit · GBMRC Weatherall Institute of Molecular Medicine · GBAustralian Regenerative Medicine Institute · AUCardiff University · GBLund University · SEMonash University · AU

Funding

Medical Research Council G0400720Medical Research Council G0600000Medical Research Council G0801508Medical Research Council MC_UU_12010/4Medical Research Council MR/N023668/1Wellcome Trust 078121Wellcome Trust 095541Wellcome Trust 100308
6 · The paper itself

Abstract

The αβ T-cell coreceptor CD4 enhances immune responses more than 1 million-fold in some assays, and yet the affinity of CD4 for its ligand, peptide-major histocompatibility class II (pMHC II) on antigen-presenting cells, is so weak that it was previously unquantifiable. Here, we report that a soluble form of CD4 failed to bind detectably to pMHC II in surface plasmon resonance-based assays, establishing a new upper limit for the solution affinity at 2.5 mM. However, when presented multivalently on magnetic beads, soluble CD4 bound pMHC II-expressing B cells, confirming that it is active and allowing mapping of the native coreceptor binding site on pMHC II. Whereas binding was undetectable in solution, the affinity of the CD4/pMHC II interaction could be measured in 2D using CD4- and adhesion molecule-functionalized, supported lipid bilayers, yielding a 2D Kd of ∼5,000 molecules/μm(2) This value is two to three orders of magnitude higher than previously measured 2D Kd values for interacting leukocyte surface proteins. Calculations indicated, however, that CD4/pMHC II binding would increase rates of T-cell receptor (TCR) complex phosphorylation by threefold via the recruitment of Lck, with only a small, 2-20% increase in the effective affinity of the TCR for pMHC II. The affinity of CD4/pMHC II therefore seems to be set at a value that increases T-cell sensitivity by enhancing phosphorylation, without compromising ligand discrimination.

Indexed as

Binding SitesCD4 AntigensHEK293 CellsHLA-A24 AntigenHLA-DRB1 ChainsHumansMaltose-Binding ProteinsModels, MolecularPhosphorylationProtein BindingProtein Interaction Domains and MotifsProtein Interaction MappingProtein Processing, Post-TranslationalProtein StabilitySurface Plasmon ResonanceCD4 AntigensHLA-A*24:02 antigenHLA-A24 AntigenHLA-DRB1*15:01 antigenHLA-DRB1 ChainsMaltose-Binding Proteinsadhesionbinding equilibrium and kineticsprotein interactionsT-cell activationTCR phosphorylation

Identifiers

PMID27114505
PMCPMC4878507
OpenAlexW2343931737

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.