Evidence map›Paper›PMID 27113273›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2016

Multiple Decay Mechanisms and 2D-UV Spectroscopic Fingerprints of Singlet Excited Solvated Adenine-Uracil Monophosphate.

Quansong Li, Angelo Giussani, Javier Segarra-Martí, Artur Nenov, Ivan Rivalta, Alexander A Voityuk, Shaul Mukamel, Daniel Roca-Sanjuán, Marco Garavelli, Lluís Blancafort

Abstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Modelling Photoionisation in Isocytosine: Potential Formation of Longer-Lived Excited State Cations in its Keto Form.Chemphyschem : a European journal of chemical physics and physical chemistry · 2021
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Quansong LiKey Laboratory of Cluster Science of Ministry of Education, School of Chemistry, Beijing Institute of Technology, 100081, Beijing, P.R. China.
Angelo GiussaniDipartimento di Chimica "G. Ciamician", Università di Bologna, Via Selmi 2, 40126, Bologna, Italy.
Javier Segarra-MartíDipartimento di Chimica "G. Ciamician", Università di Bologna, Via Selmi 2, 40126, Bologna, Italy.
Artur NenovDipartimento di Chimica "G. Ciamician", Università di Bologna, Via Selmi 2, 40126, Bologna, Italy.
Ivan RivaltaUniv Lyon, >Ens de Lyon, CNRS, Université Lyon 1, Laboratoire de Chimie UMR 5182, 69342, Lyon, France.ORCID 0000-0002-1208-602X
Alexander A VoityukInstitut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, Campus de Montilvi, 17071, Girona, Spain.ORCID 0000-0001-6620-4362
Shaul MukamelDepartment of Chemistry, University of California, Irvine, California, 92697-2025, USA.
Daniel Roca-SanjuánInstituto de Ciencia Molecular, Universitat de València, P. O. Box 22085, 46071, Valencia, Spain.ORCID 0000-0001-6495-2770
Marco GaravelliDipartimento di Chimica "G. Ciamician", Università di Bologna, Via Selmi 2, 40126, Bologna, Italy. marco.garavelli@unibo.it.ORCID 0000-0002-0796-289X
Lluís BlancafortInstitut de Química Computacional i Catàlisi and Departament de Química, Universitat de Girona, Campus de Montilvi, 17071, Girona, Spain. lluis.blancafort@udg.edu.ORCID 0000-0002-0003-5540

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The decay channels of singlet excited adenine uracil monophosphate (ApU) in water are studied with CASPT2//CASSCF:MM potential energy calculations and simulation of the 2D-UV spectroscopic fingerprints with the aim of elucidating the role of the different electronic states of the stacked conformer in the excited state dynamics. The adenine (1) La state can decay without a barrier to a conical intersection with the ground state. In contrast, the adenine (1) Lb and uracil S(U) states have minima that are separated from the intersections by sizeable barriers. Depending on the backbone conformation, the CT state can undergo inter-base hydrogen transfer and decay to the ground state through a conical intersection, or it can yield a long-lived minimum stabilized by a hydrogen bond between the two ribose rings. This suggests that the (1) Lb , S(U) and CT states of the stacked conformer may all contribute to the experimental lifetimes of 18 and 240 ps. We have also simulated the time evolution of the 2D-UV spectra and provide the specific fingerprint of each species in a recommended probe window between 25 000 and 38 000 cm(-1) in which decongested, clearly distinguishable spectra can be obtained. This is expected to allow the mechanistic scenarios to be discerned in the near future with the help of the corresponding experiments. Our results reveal the complexity of the photophysics of the relatively small ApU system, and the potential of 2D-UV spectroscopy to disentangle the photophysics of multichromophoric systems.

Indexed as

Adenosine MonophosphateDNA FingerprintingModels, MolecularSpectrophotometry, UltravioletUridine MonophosphateAdenosine MonophosphateUridine Monophosphateab initio calculationsDNAmolecular electronicsphotophysicsUV/Vis spectroscopy

Identifiers

PMID27113273
PMCPMC5021121

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.