Evidence map›Paper›PMID 27112937›Full record

ArticleThe European physical journal. E, Soft matter2016

Direct comparison of elastic incoherent neutron scattering experiments with molecular dynamics simulations of DMPC phase transitions.

Bachir Aoun, Eric Pellegrini, Marcus Trapp, Francesca Natali, Laura Cantù, Paola Brocca, Yuri Gerelli, Bruno Demé, Michael Marek Koza, Mark Johnson and 1 more

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in The European physical journal. E, Soft matter, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. The effect of pH on the dynamics of natural membranes.The European physical journal. E, Soft matter · 2018
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Bachir AounInstitut Laue-Langevin, 71 avenue des Martyrs, CS 20156, 38042, Grenoble Cedex 9, France.
Eric PellegriniInstitut Laue-Langevin, 71 avenue des Martyrs, CS 20156, 38042, Grenoble Cedex 9, France.
Marcus TrappAngewandte Physikalische Chemie, Universität Heidelberg, Im Neuenheimer Feld 253, 69120, Heidelberg, Germany.
Francesca NataliInstitut Laue-Langevin, 71 avenue des Martyrs, CS 20156, 38042, Grenoble Cedex 9, France.
Laura CantùUniversity of Milan, via F. lli Cervi 93, 20090, Segrate, Italy.
Paola BroccaUniversity of Milan, via F. lli Cervi 93, 20090, Segrate, Italy.
Yuri GerelliInstitut Laue-Langevin, 71 avenue des Martyrs, CS 20156, 38042, Grenoble Cedex 9, France.
Bruno DeméInstitut Laue-Langevin, 71 avenue des Martyrs, CS 20156, 38042, Grenoble Cedex 9, France.
Michael Marek KozaInstitut Laue-Langevin, 71 avenue des Martyrs, CS 20156, 38042, Grenoble Cedex 9, France.
Mark JohnsonInstitut Laue-Langevin, 71 avenue des Martyrs, CS 20156, 38042, Grenoble Cedex 9, France.
Judith PetersInstitut Laue-Langevin, 71 avenue des Martyrs, CS 20156, 38042, Grenoble Cedex 9, France. peters@ill.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neutron scattering techniques have been employed to investigate 1,2-dimyristoyl-sn -glycero-3-phosphocholine (DMPC) membranes in the form of multilamellar vesicles (MLVs) and deposited, stacked multilamellar-bilayers (MLBs), covering transitions from the gel to the liquid phase. Neutron diffraction was used to characterise the samples in terms of transition temperatures, whereas elastic incoherent neutron scattering (EINS) demonstrates that the dynamics on the sub-macromolecular length-scale and pico- to nano-second time-scale are correlated with the structural transitions through a discontinuity in the observed elastic intensities and the derived mean square displacements. Molecular dynamics simulations have been performed in parallel focussing on the length-, time- and temperature-scales of the neutron experiments. They correctly reproduce the structural features of the main gel-liquid phase transition. Particular emphasis is placed on the dynamical amplitudes derived from experiment and simulations. Two methods are used to analyse the experimental data and mean square displacements. They agree within a factor of 2 irrespective of the probed time-scale, i.e. the instrument utilized. Mean square displacements computed from simulations show a comparable level of agreement with the experimental values, albeit, the best match with the two methods varies for the two instruments. Consequently, experiments and simulations together give a consistent picture of the structural and dynamical aspects of the main lipid transition and provide a basis for future, theoretical modelling of dynamics and phase behaviour in membranes. The need for more detailed analytical models is pointed out by the remaining variation of the dynamical amplitudes derived in two different ways from experiments on the one hand and simulations on the other.

Indexed as

ElasticityMolecular Dynamics SimulationNeutron DiffractionPhase TransitionDimyristoylphosphatidylcholineLipid BilayersMolecular ConformationDimyristoylphosphatidylcholineLipid BilayersLiving systems: Biological Matter

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.