Evidence map›Paper›PMID 27112796›Full record

ArticleScientific reports2016

Large-scale identification of small noncoding RNA with strand-specific deep sequencing and characterization of a novel virulence-related sRNA in Brucella melitensis.

Zhijun Zhong, Xiaoyang Xu, Xinran Li, Shiwei Liu, Shuangshuang Lei, Mingjuan Yang, Jiuxuan Yu, Jiuyun Yuan, Yuehua Ke, Xinying Du and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. A comprehensive review of small regulatory RNAs inFrontiers in veterinary science · 2022
    Review
  4. Uncovering the Hidden Credentials ofMicrobiology and molecular biology reviews : MMBR · 2021
    Review
  5. Article
  6. Prevalence ofVeterinary world · 2019
    Article
  7. Article
  8. BASI74, a Virulence-Related sRNA inFrontiers in microbiology · 2018
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Zhijun ZhongCollege of Veterinary Medicine, Key Laboratory of Animal Disease and Human Health of Sichuan Province, Sichuan Agricultural University, Sichuan Province, Chengdu 611130, P. R. China.
Xiaoyang XuCollege of Veterinary Medicine, Key Laboratory of Animal Disease and Human Health of Sichuan Province, Sichuan Agricultural University, Sichuan Province, Chengdu 611130, P. R. China.
Xinran LiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing 100071, P. R. China.
Shiwei LiuWangjing Hospital, Academy of Traditional Chinese Medicine, Beijing 100102, P. R. China.
Shuangshuang LeiCollege of Veterinary Medicine, Key Laboratory of Animal Disease and Human Health of Sichuan Province, Sichuan Agricultural University, Sichuan Province, Chengdu 611130, P. R. China.
Mingjuan YangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing 100071, P. R. China.
Jiuxuan YuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing 100071, P. R. China.
Jiuyun YuanInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing 100071, P. R. China.
Yuehua KeInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing 100071, P. R. China.
Xinying DuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing 100071, P. R. China.
Zhoujia WangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing 100071, P. R. China.
Zhihua RenCollege of Veterinary Medicine, Key Laboratory of Animal Disease and Human Health of Sichuan Province, Sichuan Agricultural University, Sichuan Province, Chengdu 611130, P. R. China.
Guangneng PengCollege of Veterinary Medicine, Key Laboratory of Animal Disease and Human Health of Sichuan Province, Sichuan Agricultural University, Sichuan Province, Chengdu 611130, P. R. China.
Yufei WangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing 100071, P. R. China.
Zeliang ChenInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing 100071, P. R. China.
Academy of Military Medical Sciences · CNSichuan Agricultural University · CNWangjing Hospital of China Academy of Chinese Medical Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Brucella is the causative agent of brucellosis, a worldwide epidemic zoonosis. Small noncoding RNAs (sRNAs) are important modulators of gene expression and involved in pathogenesis and stress adaptation of Brucella. In this study, using a strand-specific RNA deep-sequencing approach, we identified a global set of sRNAs expressed by B. melitensis 16M. In total, 1321 sRNAs were identified, ranging from 100 to 600 nucleotides. These sRNAs differ in their expression levels and strand and chromosomal distributions. The role of BSR0441, one of these sRNAs, in the virulence of B. melitensis 16M was further characterized. BSR0441 was highly induced during the infection of macrophages and mice. The deletion mutant of BSR0441 showed significantly reduced spleen colonization in the middle and late phases of infection. The expression of the BSR0441 target mRNA genes was also altered in the BSR0441 mutant strain during macrophage and mice infection, which is consistent with its reduced intracellular survival capacity. In summary, Brucella encodes a large number of sRNAs, which may be involved in the stress adaptation and virulence of Brucella. Further investigation of these regulators will extend our understanding of the Brucella pathogenesis mechanism and the interactions between Brucella and its hosts.

Indexed as

AnimalsBacterial LoadBrucella melitensisBrucellosisDisease Models, AnimalGene DeletionGene Expression ProfilingHigh-Throughput Nucleotide SequencingMacrophagesMiceMicrobial ViabilityRNA, Small UntranslatedSequence Analysis, RNASpleenVirulenceRNA, Small Untranslated

Identifiers

PMID27112796
PMCPMC4845025
OpenAlexW2344291006

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.