Evidence map›Paper›PMID 27112593›Full record

ArticleScientific reports2016

Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection.

Garima Sharma, Divya Tej Sowpati, Prakruti Singh, Mehak Zahoor Khan, Rakesh Ganji, Sandeep Upadhyay, Sharmistha Banerjee, Vinay Kumar Nandicoori, Sanjeev Khosla

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 66 citations in OpenAlex.

  1. Epigenetic Reprogramming byAntibiotics (Basel, Switzerland) · 2026
    Review
  2. Review
  3. Macrophage states and polarization duringFrontiers in cellular and infection microbiology · 2026
    Review
  4. Review
  5. Article
  6. Journal of clinical tuberculosis and other mycobacterial diseases · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. MIAOME: Human microbiome affect the host epigenome.Computational and structural biotechnology journal · 2022
    Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Garima SharmaCentre for DNA Fingerprinting and Diagnostics (CDFD), Hyderabad 500001, India.
Divya Tej SowpatiCentre for Cellular and Molecular Biology (CCMB), Council of Scientific and Industrial Research (CSIR), Hyderabad, India.
Prakruti SinghCentre for DNA Fingerprinting and Diagnostics (CDFD), Hyderabad 500001, India.
Mehak Zahoor KhanNational Institute of Immunology, Delhi 110067, India.
Rakesh GanjiDepartment of Biochemistry, School of Life Sciences, University of Hyderabad, Telangana State, India.
Sandeep UpadhyayNational Institute of Immunology, Delhi 110067, India.
Sharmistha BanerjeeDepartment of Biochemistry, School of Life Sciences, University of Hyderabad, Telangana State, India.
Vinay Kumar NandicooriNational Institute of Immunology, Delhi 110067, India.
Sanjeev KhoslaCentre for DNA Fingerprinting and Diagnostics (CDFD), Hyderabad 500001, India.
National Institute of Immunology · INCentre for DNA Fingerprinting and Diagnostics · INUniversity of Hyderabad · INCentre for Cellular and Molecular Biology · INManipal Academy of Higher Education · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A mammalian cell utilizes DNA methylation to modulate gene expression in response to environmental changes during development and differentiation. Aberrant DNA methylation changes as a correlate to diseased states like cancer, neurodegenerative conditions and cardiovascular diseases have been documented. Here we show genome-wide DNA methylation changes in macrophages infected with the pathogen M. tuberculosis. Majority of the affected genomic loci were hypermethylated in M. tuberculosis infected THP1 macrophages. Hotspots of differential DNA methylation were enriched in genes involved in immune response and chromatin reorganization. Importantly, DNA methylation changes were observed predominantly for cytosines present in non-CpG dinucleotide context. This observation was consistent with our previous finding that the mycobacterial DNA methyltransferase, Rv2966c, targets non-CpG dinucleotides in the host DNA during M. tuberculosis infection and reiterates the hypothesis that pathogenic bacteria use non-canonical epigenetic strategies during infection.

Indexed as

DNA MethylationBacterial ProteinsChromosome MappingCpG IslandsCytosineEpigenesis, GeneticGene Expression RegulationHistonesHumansImmunityMycobacterium tuberculosisTHP-1 CellsTuberculosisBacterial ProteinsCytosineHistonesHupB protein, Mycobacterium tuberculosis

Identifiers

PMID27112593
PMCPMC4845000
OpenAlexW2343309337

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.