Evidence map›Paper›PMID 27112447›Full record

ArticleScientific reports2016

Hypomethylation of ERVs in the sperm of mice haploinsufficient for the histone methyltransferase Setdb1 correlates with a paternal effect on phenotype.

Lucia Daxinger, Harald Oey, Luke Isbel, Nadia C Whitelaw, Neil A Youngson, Alex Spurling, Kelly K D Vonk, Emma Whitelaw

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

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  8. The expanding repertoire of hereditary information carriers.Development (Cambridge, England) · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Lucia DaxingerDepartment of Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, VIC, 3086 Australia.
Harald OeyDepartment of Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, VIC, 3086 Australia.
Luke IsbelDepartment of Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, VIC, 3086 Australia.
Nadia C WhitelawEpigenetics Laboratory, QIMR Berghofer Medical Research Institute, Herston, Brisbane 4006, QLD, Australia.
Neil A YoungsonDepartment of Pharmacology, School of Medical Sciences, UNSW Australia, Sydney 2052, Australia.
Alex SpurlingDepartment of Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, VIC, 3086 Australia.
Kelly K D VonkDepartment of Human Genetics, Leiden University Medical Centre, Leiden, The Netherlands.
Emma WhitelawDepartment of Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, VIC, 3086 Australia.
La Trobe University · AULeiden University · NLQIMR Berghofer Medical Research Institute · AUUNSW Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The number of reports of paternal epigenetic influences on the phenotype of offspring in rodents is increasing but the molecular events involved remain unclear. Here, we show that haploinsufficiency for the histone 3 lysine 9 methyltransferase Setdb1 in the sire can influence the coat colour phenotype of wild type offspring. This effect occurs when the allele that directly drives coat colour is inherited from the dam, inferring that the effect involves an "in trans" step. The implication of this finding is that epigenetic state of the sperm can alter the expression of genes inherited on the maternally derived chromosomes. Whole genome bisulphite sequencing revealed that Setdb1 mutant mice show DNA hypomethylation at specific classes of transposable elements in the sperm. Our results identify Setdb1 as a paternal effect gene in the mouse and suggest that epigenetic inheritance may be more likely in individuals with altered levels of epigenetic modifiers.

Indexed as

DNA MethylationHaploinsufficiencyPaternal InheritanceAnimalsEndogenous RetrovirusesEpigenesis, GeneticGene Expression Regulation, DevelopmentalHistone-Lysine N-MethyltransferaseMaleMicePhenotypeQuantitative Trait LociRetroelementsSpermatozoaWhole Genome SequencingHistone-Lysine N-MethyltransferaseRetroelementsSETDB1 protein, mouse

Identifiers

PMID27112447
PMCPMC4845014
OpenAlexW2342766902

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.