Evidence map›Paper›PMID 27111144›Full record

ArticleNature immunology2016

Tcf1 and Lef1 transcription factors establish CD8(+) T cell identity through intrinsic HDAC activity.

Shaojun Xing, Fengyin Li, Zhouhao Zeng, Yunjie Zhao, Shuyang Yu, Qiang Shan, Yalan Li, Farrah C Phillips, Peterson K Maina, Hank H Qi and 7 more

Abstract read
In one paragraph

Article in Nature immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 154 papers.

0numbers the graph read from it
0cells of the map it votes in
154citing papers in PubMed
11.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

154 citing papers in PubMed, 230 citations in OpenAlex.

  1. Article
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  7. Review
  8. Article
  9. Article
  10. Article
  11. Pre-division TCF1 drop determines long-term CD8 T cell fates.bioRxiv : the preprint server for biology · 2025
    Article
  12. Engineered histones reshape chromatin in human cells.bioRxiv : the preprint server for biology · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Malonate promotes CD8Cellular & molecular immunology · 2025
    Article
  17. CD4Cell reports. Medicine · 2025
    Article
  18. Review
  19. Article
  20. Article

94 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Shaojun XingDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
Fengyin LiDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
Zhouhao ZengDepartment of Physics, The George Washington University, Washington, DC, USA.
Yunjie ZhaoDepartment of Physics, The George Washington University, Washington, DC, USA.
Shuyang YuState Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, China.
Qiang ShanDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
Yalan LiProteomics Facility, University of Iowa, Iowa City, Iowa, USA.
Farrah C PhillipsDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
Peterson K MainaDepartment of Anatomy and Cell Biology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
Hank H QiDepartment of Anatomy and Cell Biology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
Chengyu LiuTransgenic Core Facility, NHLBI, National Institutes of Health, Bethesda, Maryland, USA.
Jun ZhuSystems Biology Center, NHLBI, National Institutes of Health, Bethesda, Maryland, USA.ORCID 0000-0003-4573-8933
R Marshall PopeProteomics Facility, University of Iowa, Iowa City, Iowa, USA.
Catherine A MusselmanDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
Chen ZengDepartment of Physics, The George Washington University, Washington, DC, USA.
Weiqun PengDepartment of Physics, The George Washington University, Washington, DC, USA.
Hai-Hui XueDepartment of Microbiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA.
University of Iowa · USGeorge Washington University · USNational Institutes of Health · USChina Agricultural University · CN

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Douglas Robert Spitz · 2000 to 2026
$70.0M
Transgenic CoreZICHL005907 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI LIU, CHENGYU · 2010 to 2025
$25.8M
DNA Sequencing Core (DSC)ZICHL006058 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHU, JUN · 2010 to 2016
$16.6M
Tcf/Lef-b-catenin in T cell identity and cancerR01AI112579 · NIAID · UNIVERSITY OF IOWA · PI Hai-Hui Xue · 2015 to 2026
$5.4M
RNA systems biologyZIAHL006230 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI ZHU, JUN · 2017 to 2018
$1.0M
Flow Cytometry Cell SorterS10OD016199 · OD · UNIVERSITY OF IOWA · PI BALLAS, ZUHAIR K. · 2015 to 2015
$443k
Epigenomic landscape in naive, effector, and memory CD8 T cellsR21AI115149 · NIAID · UNIVERSITY OF IOWA · PI TAN, KAI, XUE, HAI-HUI · 2015 to 2016
$417k
Characterization of Regulated Intron Retention in T Cell ActivationR21AI113806 · NIAID · GEORGE WASHINGTON UNIVERSITY · PI HAWLEY, ROBERT G., PENG, WEIQUN · 2014 to 2015
$417k
Molecular mechanisms controlling differentiation of memory CD8 T cellsR21AI119160 · NIAID · UNIVERSITY OF IOWA · PI BADOVINAC, VLADIMIR P, XUE, HAI-HUI · 2015 to 2016
$414k
Decoding TCF1-controlled transcriptional program that promotes memory T cell fateR21AI105351 · NIAID · UNIVERSITY OF IOWA · PI XUE, HAI-HUI · 2013 to 2014
$378k
Targeting Tcf/Lef-transcriptional program in leukemic stem cellsI01BX002903 · VA · VA NEW JERSEY HEALTH CARE SYSTEM · PI XUE, HAI-HUI · 2016 to 2019
–
BLRD VA I01 BX002903NIAID NIH HHS R01 AI112579NIAID NIH HHS R21 AI105351NIAID NIH HHS R21 AI113806NIAID NIH HHS R21 AI115149NIAID NIH HHS R21 AI119160NIH HHS S10 OD016199
6 · The paper itself

Abstract

The CD4(+) and CD8(+) T cell dichotomy is essential for effective cellular immunity. How individual T cell identity is established remains poorly understood. Here we show that the high-mobility group (HMG) transcription factors Tcf1 and Lef1 are essential for repressing CD4(+) lineage-associated genes including Cd4, Foxp3 and Rorc in CD8(+) T cells. Tcf1- and Lef1-deficient CD8(+) T cells exhibit histone hyperacetylation, which can be ascribed to intrinsic histone deacetylase (HDAC) activity in Tcf1 and Lef1. Mutation of five conserved amino acids in the Tcf1 HDAC domain diminishes HDAC activity and the ability to suppress CD4(+) lineage genes in CD8(+) T cells. These findings reveal that sequence-specific transcription factors can utilize intrinsic HDAC activity to guard cell identity by repressing lineage-inappropriate genes.

Indexed as

AcetylationAnimalsCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCell DifferentiationCell LineageCells, CulturedFemaleGene Expression RegulationHepatocyte Nuclear Factor 1-alphaHistone DeacetylasesLymphoid Enhancer-Binding Factor 1MaleMiceMice, Inbred C57BLMice, KnockoutHepatocyte Nuclear Factor 1-alphaHistone DeacetylasesHnf1a protein, mouseLef1 protein, mouseLymphoid Enhancer-Binding Factor 1

Identifiers

PMID27111144
PMCPMC4873337
OpenAlexW2343888903

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.