Evidence map›Paper›PMID 27111068›Full record

ArticlePloS one2016

Oxidative Stress Triggers Body-Wide Skipping of Multiple Exons of the Spinal Muscular Atrophy Gene.

Joonbae Seo, Natalia N Singh, Eric W Ottesen, Senthilkumar Sivanesan, Maria Shishimorova, Ravindra N Singh

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Pharmacological Activation of NRF2 by Omaveloxolone Upregulates NRF2-Target Proteins in SMA Type I Human Fibroblasts.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Pathophysiology and Management of Fatigue in Neuromuscular Diseases.International journal of molecular sciences · 2023
    Review
  12. Review
  13. Mitochondrial Dysfunction in Spinal Muscular Atrophy.International journal of molecular sciences · 2022
    Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Revisiting the role of mitochondria in spinal muscular atrophy.Cellular and molecular life sciences : CMLS · 2021
    Review
  19. Spinal muscular atrophy: Broad disease spectrum and sex-specific phenotypes.Biochimica et biophysica acta. Molecular basis of disease · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Joonbae SeoDepartment of Biomedical Sciences, Iowa State University, Ames, Iowa 50011, United States of America.
Natalia N SinghDepartment of Biomedical Sciences, Iowa State University, Ames, Iowa 50011, United States of America.
Eric W OttesenDepartment of Biomedical Sciences, Iowa State University, Ames, Iowa 50011, United States of America.
Senthilkumar SivanesanDepartment of Biomedical Sciences, Iowa State University, Ames, Iowa 50011, United States of America.
Maria ShishimorovaDepartment of Biomedical Sciences, Iowa State University, Ames, Iowa 50011, United States of America.
Ravindra N SinghDepartment of Biomedical Sciences, Iowa State University, Ames, Iowa 50011, United States of America.
Iowa State University · US

Funding

Splicing Regulation of Spinal Muscular Atrophy GenesR01NS055925 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SINGH, RAVINDRA N · 2006 to 2023
$5.6M
Small Oligonucleotides As Therapeutic Agents Of Spinal Muscular AtrophyR21NS072259 · NINDS · IOWA STATE UNIVERSITY · PI SINGH, RAVINDRA N · 2011 to 2012
$402k
High-affinity RNA targets of Survival Motor Neuron ProteinR21NS080294 · NINDS · IOWA STATE UNIVERSITY · PI SINGH, RAVINDRA N · 2012 to 2013
$389k
NINDS NIH HHS R01 NS055925NINDS NIH HHS R21 NS072259NINDS NIH HHS R21 NS080294
6 · The paper itself

Abstract

Humans carry two nearly identical copies of Survival Motor Neuron gene: SMN1 and SMN2. Loss of SMN1 leads to spinal muscular atrophy (SMA), the most frequent genetic cause of infant mortality. While SMN2 cannot compensate for the loss of SMN1 due to predominant skipping of exon 7, correction of SMN2 exon 7 splicing holds the promise of a cure for SMA. Previously, we used cell-based models coupled with a multi-exon-skipping detection assay (MESDA) to demonstrate the vulnerability of SMN2 exons to aberrant splicing under the conditions of oxidative stress (OS). Here we employ a transgenic mouse model and MESDA to examine the OS-induced splicing regulation of SMN2 exons. We induced OS using paraquat that is known to trigger production of reactive oxygen species and cause mitochondrial dysfunction. We show an overwhelming co-skipping of SMN2 exon 5 and exon 7 under OS in all tissues except testis. We also show that OS increases skipping of SMN2 exon 3 in all tissues except testis. We uncover several new SMN2 splice isoforms expressed at elevated levels under the conditions of OS. We analyze cis-elements and transacting factors to demonstrate the diversity of mechanisms for splicing misregulation under OS. Our results of proteome analysis reveal downregulation of hnRNP H as one of the potential consequences of OS in brain. Our findings suggest SMN2 as a sensor of OS with implications to SMA and other diseases impacted by low levels of SMN protein.

Indexed as

Alternative SplicingExonsAnimalsBase SequenceBiological AssayDisease Models, AnimalGene ExpressionHumansIntronsMiceMice, TransgenicMotor NeuronsMuscular Atrophy, SpinalNucleic Acid ConformationOxidative StressParaquatParaquatSmn1 protein, mouseSMN2 protein, mouseSurvival of Motor Neuron 1 ProteinSurvival of Motor Neuron 2 Protein

Identifiers

PMID27111068
PMCPMC4844106
OpenAlexW2343972150

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.