Evidence map›Paper›PMID 27110680›Full record

ArticleNature chemical biology2016

A PHGDH inhibitor reveals coordination of serine synthesis and one-carbon unit fate.

Michael E Pacold, Kyle R Brimacombe, Sze Ham Chan, Jason M Rohde, Caroline A Lewis, Lotteke J Y M Swier, Richard Possemato, Walter W Chen, Lucas B Sullivan, Brian P Fiske and 22 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 337 papers.

0numbers the graph read from it
0cells of the map it votes in
337citing papers in PubMed
20.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

337 citing papers in PubMed, 578 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Mechanical Loading Induces Distinct and Shared Responses in Endothelial and Muscle Cells and Reveals Exercise-Like Molecular Profiles.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
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  14. PHGDH is a targetable driver of PDAC progression.bioRxiv : the preprint server for biology · 2026
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review

277 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors at 8 institutions in 1 country.

Michael E PacoldWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.ORCID 0000-0003-3688-2378
Kyle R BrimacombeNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, USA.
Sze Ham ChanWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Jason M RohdeNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, USA.
Caroline A LewisKoch Institute for Integrative Cancer Research, Cambridge, Massachusetts, USA.
Lotteke J Y M SwierWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Richard PossematoNew York University Langone Medical Center, New York, New York, USA.
Walter W ChenWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Lucas B SullivanKoch Institute for Integrative Cancer Research, Cambridge, Massachusetts, USA.
Brian P FiskeKoch Institute for Integrative Cancer Research, Cambridge, Massachusetts, USA.
Steve ChoWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Elizaveta FreinkmanWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Kıvanç BirsoyLaboratory of Metabolic Regulation and Genetics, The Rockefeller University, New York, New York, USA.
Monther Abu-RemailehWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Yoav D ShaulDepartment of Biochemistry and Molecular Biology, The Institute for Medical Research Israel-Canada, The Hebrew University-Hadassah Medical School, Jerusalem, Israel.
Chieh Min LiuWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Minerva ZhouWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Min Jung KohWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Haeyoon ChungWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Shawn M DavidsonKoch Institute for Integrative Cancer Research, Cambridge, Massachusetts, USA.
Alba LuengoKoch Institute for Integrative Cancer Research, Cambridge, Massachusetts, USA.
Amy Q WangNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, USA.
Xin XuNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, USA.
Adam YasgarNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, USA.
Li LiuNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, USA.
Ganesha RaiNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, USA.
Kenneth D WestoverUniversity of Texas Southwestern Medical Center, Dallas, Texas, USA..
Matthew G Vander HeidenKoch Institute for Integrative Cancer Research, Cambridge, Massachusetts, USA.
Min ShenNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, USA.
Nathanael S GrayDana-Farber Cancer Institute, Longwood Center, Boston, Massachusetts, USA.ORCID 0000-0001-5354-7403
Matthew B BoxerNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland, USA.
David M SabatiniWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Broad Institute · USNational Institutes of Health · USAllen Institute · USDana-Farber Cancer Institute · USNYU Langone Health · USRockefeller University · USThe University of Texas Southwestern Medical Center · USWhitehead Institute for Biomedical Research · US

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI MATTHEW G. VANDER HEIDEN · 1985 to 2026
$93.9M
Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
PRE-DOCTORAL TRAINING IN THE BIOLOGICAL SCIENCEST32GM007287 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BELL, STEPHEN P., KEATING, AMY E · 1985 to 2019
$40.8M
Regulation of the mTOR Pathway By NutrientsR01CA103866 · NCI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI WEISSMAN, JONATHAN S. · 2004 to 2021
$7.0M
Cell Growth Signaling in Cancer DevelopmentR01CA129105 · NCI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI WEISSMAN, JONATHAN S. · 2008 to 2021
$5.9M
Novel Components of the mTORC1 and mTORC2 PathwaysR37AI047389 · NIAID · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI SABATINI, DAVID M. · 2010 to 2019
$4.8M
Regulation of glucose metabolism to allow tumor initiation and growthR01CA168653 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI VANDER HEIDEN, MATTHEW G. · 2013 to 2019
$1.9M
Identification of Inhibitors of Phosphoglycerate Dehydrogenase (PHGDH)ZIATR000236 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI HALL, MATTHEW · 2015 to 2017
$593k
Metabolic liabilities of cancer cells to the tumor nutrient environmentK22CA193660 · NCI · ROCKEFELLER UNIVERSITY · PI BIRSOY, KIVANC · 2016 to 2018
$542k
Understanding the role of serine metabolism in cancerR21CA198028 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI VANDER HEIDEN, MATTHEW G. · 2015 to 2016
$371k
Inhibitors of serine biosynthesisR03DA034602 · NIDA · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI SABATINI, DAVID M. · 2012 to 2013
$96k
Howard Hughes Medical InstituteNCI NIH HHS K22 CA193660NCI NIH HHS P30 CA014051NCI NIH HHS R01 CA103866NCI NIH HHS R01 CA129105NCI NIH HHS R01 CA168653NCI NIH HHS R21 CA198028NIAID NIH HHS R37 AI047389NIDA NIH HHS R03 DA034602NIGMS NIH HHS T32 GM007287NIGMS NIH HHS T32 GM007753
6 · The paper itself

Abstract

Serine is both a proteinogenic amino acid and the source of one-carbon units essential for de novo purine and deoxythymidine synthesis. In the canonical pathway of glucose-derived serine synthesis, Homo sapiens phosphoglycerate dehydrogenase (PHGDH) catalyzes the first, rate-limiting step. Genetic loss of PHGDH is toxic toward PHGDH-overexpressing breast cancer cell lines even in the presence of exogenous serine. Here, we used a quantitative high-throughput screen to identify small-molecule PHGDH inhibitors. These compounds reduce the production of glucose-derived serine in cells and suppress the growth of PHGDH-dependent cancer cells in culture and in orthotopic xenograft tumors. Surprisingly, PHGDH inhibition reduced the incorporation into nucleotides of one-carbon units from glucose-derived and exogenous serine. We conclude that glycolytic serine synthesis coordinates the use of one-carbon units from endogenous and exogenous serine in nucleotide synthesis, and we suggest that one-carbon unit wasting thus may contribute to the efficacy of PHGDH inhibitors in vitro and in vivo.

Indexed as

AnimalsCarbonCell ProliferationDose-Response Relationship, DrugEnzyme InhibitorsFemaleGlycolysisHumansMammary Neoplasms, ExperimentalMiceMolecular StructurePhosphoglycerate DehydrogenasePurinesSerineSmall Molecule LibrariesStructure-Activity RelationshipCarbonEnzyme InhibitorsPhosphoglycerate DehydrogenasepurinePurinesSerineSmall Molecule LibrariesThymidine

Identifiers

PMID27110680
PMCPMC4871733
OpenAlexW2343452853

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.