Evidence map›Paper›PMID 27110679›Full record

ArticleNature chemical biology2016

A small molecule mitigates hearing loss in a mouse model of Usher syndrome III.

Kumar N Alagramam, Suhasini R Gopal, Ruishuang Geng, Daniel H-C Chen, Ina Nemet, Richard Lee, Guilian Tian, Masaru Miyagi, Karine F Malagu, Christopher J Lock and 11 more

Registry-linked trialAbstract read
In one paragraph

Article in Nature chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06592131 (First-in-Human Phase-1, Randomised, Double-Blinded, Placebo Controlled Study to Assess Safety, Tolerability, Pharmacokinetics, and Pharmacodynamics of Single and Multiple Ascending Doses, As Well As a Food Effect Study, of BF844 When Administered Orally to Healthy Adult Participants), which is not on this map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06592131 phase1not yet recruitingnot on this mapstarted 2024, after this paper: background citation

First-in-Human Phase-1, Randomised, Double-Blinded, Placebo Controlled Study to Assess Safety, Tolerability, Pharmacokinetics, and Pharmacodynamics of Single and Multiple Ascending Doses, As Well As a Food Effect Study, of BF844 When Administered Orally to Healthy Adult Participants

TypeinterventionalSponsorEyeXCel Pty. Ltd.Ran2024 to 2025Enrolled76ConditionsUsher Syndrome Type 3ArmsBF844
3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. A Tetrazine-Based Synthesis for Accessing Underutilized Aza-Indole Analogues.Chemistry (Weinheim an der Bergstrasse, Germany) · 2025
    Article
  5. Review
  6. Article
  7. Extracellular vesicles for developing targeted hearing loss therapy.Journal of controlled release : official journal of the Controlled Release Society · 2024
    Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Usher Syndrome in the Inner Ear: Etiologies and Advances in Gene Therapy.International journal of molecular sciences · 2021
    Review
  13. Article
  14. Review
  15. Review
  16. Novel Mutations inGenes · 2020
    Article
  17. Article
  18. Review
  19. Unconventional secretory pathway activation restores hair cell mechanotransduction in an USH3A model.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 4 countries.

Kumar N AlagramamOtolaryngology Head and Neck Surgery, University Hospitals Case Medical Center, Case Western Reserve University, Cleveland, Ohio, USA.
Suhasini R GopalOtolaryngology Head and Neck Surgery, University Hospitals Case Medical Center, Case Western Reserve University, Cleveland, Ohio, USA.ORCID 0000-0002-3525-3222
Ruishuang GengOtolaryngology Head and Neck Surgery, University Hospitals Case Medical Center, Case Western Reserve University, Cleveland, Ohio, USA.
Daniel H-C ChenOtolaryngology Head and Neck Surgery, University Hospitals Case Medical Center, Case Western Reserve University, Cleveland, Ohio, USA.
Ina NemetPharmacology and Cleveland Center for Membrane and Structural Biology, Case Western Reserve University, Cleveland, Ohio, USA.
Richard LeePharmacology and Cleveland Center for Membrane and Structural Biology, Case Western Reserve University, Cleveland, Ohio, USA.
Guilian TianPharmacology and Cleveland Center for Membrane and Structural Biology, Case Western Reserve University, Cleveland, Ohio, USA.
Masaru MiyagiCenter for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, Ohio, USA.
Karine F MalaguBioFocus, a Charles River company, Chesterford Research Park, Saffron Walden, UK.
Christopher J LockBioFocus, a Charles River company, Chesterford Research Park, Saffron Walden, UK.
William R K EsmieuBioFocus, a Charles River company, Chesterford Research Park, Saffron Walden, UK.
Andrew P OwensBioFocus, a Charles River company, Chesterford Research Park, Saffron Walden, UK.
Nicola A LindsayBioFocus, a Charles River company, Chesterford Research Park, Saffron Walden, UK.
Krista OuwehandCharles River Nederland BV, Leiden, the Netherlands.
Faywell AlbertusCharles River Nederland BV, Leiden, the Netherlands.
David F FischerCharles River Nederland BV, Leiden, the Netherlands.
Roland W BürliBioFocus, a Charles River company, Chesterford Research Park, Saffron Walden, UK.
Angus M MacLeodBioFocus, a Charles River company, Chesterford Research Park, Saffron Walden, UK.
William E HarteOffice of Translation and Innovation, Case Western Reserve University, Cleveland, Ohio, USA.
Krzysztof PalczewskiPharmacology and Cleveland Center for Membrane and Structural Biology, Case Western Reserve University, Cleveland, Ohio, USA.
Yoshikazu ImanishiPharmacology and Cleveland Center for Membrane and Structural Biology, Case Western Reserve University, Cleveland, Ohio, USA.ORCID 0000-0003-4696-4836
Case Western Reserve University · USCharles River Laboratories (United Kingdom) · GBAstraZeneca (United Kingdom) · GBCharles River Laboratories (Netherlands) · NLUniversity Hospitals Cleveland Medical Center · US

Funding

Pharmacological Treatment of Retinal DiseasesR24EY021126 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI PALCZEWSKI, KRZYSZTOF · 2010 to 2014
$12.8M
Molecular Genetics of Usher Syndrome IIIAR01DC010816 · NIDCD · CASE WESTERN RESERVE UNIVERSITY · PI ALAGRAMAM, KUMAR N · 2011 to 2015
$1.7M
Illuminating the process of rod outer segment morphogenesisR01EY020826 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI IMANISHI, YOSHIKAZU · 2010 to 2013
$1.4M
NEI NIH HHS R01 EY020826NEI NIH HHS R24 EY021126NIDCD NIH HHS R01 DC010816
6 · The paper itself

Abstract

Usher syndrome type III (USH3), characterized by progressive deafness, variable balance disorder and blindness, is caused by destabilizing mutations in the gene encoding the clarin-1 (CLRN1) protein. Here we report a new strategy to mitigate hearing loss associated with a common USH3 mutation CLRN1(N48K) that involves cell-based high-throughput screening of small molecules capable of stabilizing CLRN1(N48K), followed by a secondary screening to eliminate general proteasome inhibitors, and finally an iterative process to optimize structure-activity relationships. This resulted in the identification of BioFocus 844 (BF844). To test the efficacy of BF844, we developed a mouse model that mimicked the progressive hearing loss associated with USH3. BF844 effectively attenuated progressive hearing loss and prevented deafness in this model. Because the CLRN1(N48K) mutation causes both hearing and vision loss, BF844 could in principle prevent both sensory deficiencies in patients with USH3. Moreover, the strategy described here could help identify drugs for other protein-destabilizing monogenic disorders.

Indexed as

Disease Models, AnimalAnimalsHigh-Throughput Screening AssaysHumansMembrane ProteinsMiceMolecular StructurePyrazolesPyridazinesSmall Molecule LibrariesStructure-Activity RelationshipUsher SyndromesBF844 compoundCLRN1 protein, humanClrn1 protein, mouseMembrane ProteinsPyrazolesPyridazinesSmall Molecule Libraries

Identifiers

PMID27110679
PMCPMC4871731
OpenAlexW2344331730

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.