Evidence map›Paper›PMID 27109914›Full record

ArticleScientific reports2016

Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP.

Anat Bren, Junyoung O Park, Benjamin D Towbin, Erez Dekel, Joshua D Rabinowitz, Uri Alon

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 153 citations in OpenAlex.

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  13. Laccase Production Optimization from RecombinantMolecules (Basel, Switzerland) · 2024
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  19. Tradeoffs in bacterial physiology determine the efficiency of antibiotic killing.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  20. Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Anat BrenDept. of Molecular Cell Biology, Weizmann Institute of Science, Rehovot Israel 76100.
Junyoung O ParkLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Benjamin D TowbinDept. of Molecular Cell Biology, Weizmann Institute of Science, Rehovot Israel 76100.
Erez DekelDept. of Molecular Cell Biology, Weizmann Institute of Science, Rehovot Israel 76100.
Joshua D RabinowitzLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Uri AlonDept. of Molecular Cell Biology, Weizmann Institute of Science, Rehovot Israel 76100.
Weizmann Institute of Science · ILPrinceton University · US

Funding

European Research Council 249919
6 · The paper itself

Abstract

In most conditions, glucose is the best carbon source for E. coli: it provides faster growth than other sugars, and is consumed first in sugar mixtures. Here we identify conditions in which E. coli strains grow slower on glucose than on other sugars, namely when a single amino acid (arginine, glutamate, or proline) is the sole nitrogen source. In sugar mixtures with these nitrogen sources, E. coli still consumes glucose first, but grows faster rather than slower after exhausting glucose, generating a reversed diauxic shift. We trace this counterintuitive behavior to a metabolic imbalance: levels of TCA-cycle metabolites including α-ketoglutarate are high, and levels of the key regulatory molecule cAMP are low. Growth rates were increased by experimentally increasing cAMP levels, either by adding external cAMP, by genetically perturbing the cAMP circuit or by inhibition of glucose uptake. Thus, the cAMP control circuitry seems to have a 'bug' that leads to slow growth under what may be an environmentally rare condition.

Indexed as

Carbohydrate MetabolismCitric Acid Cycle8-Bromo Cyclic Adenosine MonophosphateCarbohydratesCarbonCyclic AMPEnergy MetabolismEscherichia coliGlucoseKetoglutaric Acids8-Bromo Cyclic Adenosine Monophosphate8-chloro-cyclic adenosine monophosphateCarbohydratesCarbonCyclic AMPGlucoseKetoglutaric Acids

Identifiers

PMID27109914
PMCPMC4843011
OpenAlexW2342427357

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.