Evidence map›Paper›PMID 27109553›Full record

ArticleThe journal of physical chemistry. B2016

The "Lid" in the Streptococcus pneumoniae SrtC1 Sortase Adopts a Rigid Structure that Regulates Substrate Access to the Active Site.

Alex W Jacobitz, Emmanuel B Naziga, Sung Wook Yi, Scott A McConnell, Robert Peterson, Michael E Jung, Robert T Clubb, Jeff Wereszczynski

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Frontiers in microbiology · 2021
    Review
  3. Article
  4. A comprehensive in silico analysis of sortase superfamily.Journal of microbiology (Seoul, Korea) · 2019
    Article
  5. Article
  6. In vitro reconstitution of sortase-catalyzed pilus polymerization reveals structural elements involved in pilin cross-linking.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. Article
  8. Pilus biogenesis of Gram-positive bacteria: Roles of sortases and implications for assembly.Protein science : a publication of the Protein Society · 2017
    Review
  9. Sortase Transpeptidases: Structural Biology and Catalytic Mechanism.Advances in protein chemistry and structural biology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Alex W JacobitzDepartment of Chemistry and Biochemistry and the UCLA-DOE Institute of Genomics and Proteomics, University of California, Los Angeles , 611 Charles E. Young Drive East, Los Angeles, California 90095-1570, United States.
Emmanuel B NazigaDepartment of Physics and Center for Molecular Study of Condensed Soft Matter, Illinois Institute of Technology , 3440 South Dearborn Street, Chicago, Illinois 60616, United States.
Sung Wook YiDepartment of Chemistry and Biochemistry and the UCLA-DOE Institute of Genomics and Proteomics, University of California, Los Angeles , 611 Charles E. Young Drive East, Los Angeles, California 90095-1570, United States.
Scott A McConnellDepartment of Chemistry and Biochemistry and the UCLA-DOE Institute of Genomics and Proteomics, University of California, Los Angeles , 611 Charles E. Young Drive East, Los Angeles, California 90095-1570, United States.
Robert PetersonDepartment of Chemistry and Biochemistry and the UCLA-DOE Institute of Genomics and Proteomics, University of California, Los Angeles , 611 Charles E. Young Drive East, Los Angeles, California 90095-1570, United States.
Michael E JungDepartment of Chemistry and Biochemistry and the UCLA-DOE Institute of Genomics and Proteomics, University of California, Los Angeles , 611 Charles E. Young Drive East, Los Angeles, California 90095-1570, United States.
Robert T ClubbDepartment of Chemistry and Biochemistry and the UCLA-DOE Institute of Genomics and Proteomics, University of California, Los Angeles , 611 Charles E. Young Drive East, Los Angeles, California 90095-1570, United States.
Jeff WereszczynskiDepartment of Physics and Center for Molecular Study of Condensed Soft Matter, Illinois Institute of Technology , 3440 South Dearborn Street, Chicago, Illinois 60616, United States.
University of California, Los Angeles · USIllinois Institute of Technology · US

Funding

UCLA NIGMS T32 Program AssessmentT32GM007185 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TORRES, JORGE · 1985 to 2020
$21.7M
Cell Surface Protein Anchoring in Gram-Positive BacteriaR01AI052217 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Robert Thompson Clubb · 2002 to 2026
$8.5M
Bruker Avance III Console and QCI Cryoprobe for a 600 MHz NMR SpectrometerS10OD016336 · OD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CLUBB, ROBERT THOMPSON · 2014 to 2014
$600k
Multiscale Modeling of Pilin Subunit Recognition by Pneumoccus Sortase C enzymesK22AI104799 · NIAID · ILLINOIS INSTITUTE OF TECHNOLOGY · PI WERESZCZYNSKI, JEFFERY · 2013 to 2014
$261k
NIAID NIH HHS K22 AI104799NIAID NIH HHS R01 AI052217NIGMS NIH HHS T32 GM007185NIH HHS S10 OD016336
6 · The paper itself

Abstract

Many species of Gram-positive bacteria use sortase enzymes to assemble long, proteinaceous pili structures that project from the cell surface to mediate microbial adhesion. Sortases construct highly stable structures by catalyzing a transpeptidation reaction that covalently links pilin subunits together via isopeptide bonds. Most Gram-positive pili are assembled by class C sortases that contain a "lid", a structurally unique N-terminal extension that occludes the active site. It has been hypothesized that the "lid" in many sortases is mobile and thus capable of readily being displaced from the enzyme to facilitate substrate binding. Here, we show using NMR dynamics measurements, in vitro assays, and molecular dynamics simulations that the lid in the class C sortase from Streptococcus pneumoniae (SrtC1) adopts a rigid conformation in solution that is devoid of large magnitude conformational excursions that occur on mechanistically relevant time scales. Additionally, we show that point mutations in the lid induce dynamic behavior that correlates with increased hydrolytic activity and sorting signal substrate access to the active site cysteine residue. These results suggest that the lid of the S. pneumoniae SrtC1 enzyme has a negative regulatory function and imply that a significant energetic barrier must be surmounted by currently unidentified factors to dislodge it from the active site to initiate pilus biogenesis.

Indexed as

Point MutationAmino Acid MotifsAminoacyltransferasesBacterial ProteinsBiocatalysisCatalytic DomainCrystallography, X-RayCysteine EndopeptidasesKineticsMolecular Dynamics SimulationProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein Interaction Domains and MotifsStreptococcus pneumoniaeSubstrate SpecificityAminoacyltransferasesBacterial ProteinsCysteine Endopeptidasessortase C

Identifiers

PMID27109553
PMCPMC5097456
OpenAlexW2345286031

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.