Evidence map›Paper›PMID 27108798›Full record

ArticleAmerican journal of human genetics2016

A Restricted Repertoire of De Novo Mutations in ITPR1 Cause Gillespie Syndrome with Evidence for Dominant-Negative Effect.

Meriel McEntagart, Kathleen A Williamson, Jacqueline K Rainger, Ann Wheeler, Anne Seawright, Elfride De Baere, Hannah Verdin, L Therese Bergendahl, Alan Quigley, Joe Rainger and 28 more

Open access · hybridAbstract read
In one paragraph

Article in American journal of human genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 101 citations in OpenAlex.

  1. Article
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  4. Review
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  7. Review
  8. Review
  9. Article
  10. Review
  11. Detailed Analysis of ITPR1 Missense Variants Guides Diagnostics and Therapeutic Design.Movement disorders : official journal of the Movement Disorder Society · 2024
    Article
  12. Frontiers in neurology · 2024
    Article
  13. Cold Spring Harbor molecular case studies · 2023
    Article
  14. Review
  15. Article
  16. Article
  17. Identification of two novel autism genes,Frontiers in psychiatry · 2023
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors at 19 institutions in 5 countries.

Meriel McEntagartMedical Genetics, St George's University Hospitals NHS Foundation Trust, Cranmer Terrace, London SW17 0RE, UK.
Kathleen A WilliamsonMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK.
Jacqueline K RaingerMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK.
Ann WheelerMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK.
Anne SeawrightMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK.
Elfride De BaereCenter for Medical Genetics Ghent (CMGG), Ghent University Hospital, Medical Research Building (MRB), 1st Floor, Room 110.029, De Pintelaan 185, 9000 Ghent, Belgium.
Hannah VerdinCenter for Medical Genetics Ghent (CMGG), Ghent University Hospital, Medical Research Building (MRB), 1st Floor, Room 110.029, De Pintelaan 185, 9000 Ghent, Belgium.
L Therese BergendahlMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK.
Alan QuigleyDepartment of Radiology, Royal Hospital for Sick Children, Edinburgh EH9 1LF, UK.
Joe RaingerMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK; Roslin Institute, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, UK.
Abhijit DixitClinical Genetics, Nottingham City Hospital, Hucknall Road, Nottingham NG5 1PB, UK.
Ajoy SarkarClinical Genetics, Nottingham City Hospital, Hucknall Road, Nottingham NG5 1PB, UK.
Eduardo López LasoPediatric Neurology Unit, Department of Pediatrics, Reina Sofia University Hospital, Av. Menéndez Pidal s/n, 14004 Córdoba, Spain.
Rocio Sanchez-CarpinteroPaediatric Neurology Unit, Department of Paediatrics, Clinica Universidad de Navarra, 31008 Pamplona, Spain.
Jesus BarrioDepartment of Ophthalmology, Clinica Universidad de Navarra, 31008 Pamplona, Spain.
Pierre BitounService de pédiatrie, CHU Paris Seine-Saint-Denis - Hôpital Jean Verdier Avenue du 14 juillet, 93140 Bondy, France.
Trine PrescottDepartment of Medical Genetics, Oslo University Hospital, 0424 Oslo, Norway.
Ruth RiiseDepartment of Ophthalmology, Innland Hospital, 2418 Elverum, Norway.
Shane McKeeNorthern Ireland Regional Genetics Service, Belfast City Hospital, Belfast BT9 7AB, UK.
Jackie CookSheffield Clinical Genetics Service, Sheffield Children's Hospital, Western Bank, Sheffield S10 2TH, UK.
Lisa McKieMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK.
Berten CeulemansDepartment of Neurology-Pediatric Neurology, University and University Hospital Antwerp, Antwerp 2650, Belgium.
Françoise MeireDepartment of Ophthalmology, Queen Fabiola Children's University Hospital, 1020 Brussels, Belgium.
I Karen TempleHuman Development and Health Academic Unit, University Hospital Southampton, Tremona Road, University of Southampton, Southampton SO16 6YD, UK.
Fabienne PrieurService Génétique, Plateau de biologie, CHU Saint Etienne, 42055 Saint Etienne cedex 2, France.
Jonathan WilliamsOxford University Hospitals NHS Trust, Oxford Medical Genetics Laboratories, The Churchill Hospital, Old Road, Headington, Oxford OX3 7LE, UK.
Penny CloustonOxford University Hospitals NHS Trust, Oxford Medical Genetics Laboratories, The Churchill Hospital, Old Road, Headington, Oxford OX3 7LE, UK.
Andrea H NémethNuffield Department of Clinical Neurosciences, University of Oxford, Oxford OX3 7LJ, UK.
Siddharth BankaManchester Centre for Genomic Medicine, University of Manchester, St. Mary's Hospital, Oxford Road, Manchester M13 9WL, UK.
Hemant BenganiMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK.
Mark HandleyMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK.
Elisabeth FreyerMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK.
Allyson RossMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK.
DDD StudyDDD Study, Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
Veronica van HeyningenMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK.
Joseph A MarshMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK.
Frances ElmslieMedical Genetics, St George's University Hospitals NHS Foundation Trust, Cranmer Terrace, London SW17 0RE, UK.
David R FitzPatrickMRC Human Genetics Unit, IGMM, University of Edinburgh, Western General Hospital, Edinburgh EH4 2XU, UK. Electronic address: david.fitzpatrick@ed.ac.uk.
Western General Hospital · GBUniversity of Edinburgh · GBChurchill Hospital · GBClinica Universidad de Navarra · ESGhent University Hospital · BENottingham City Hospital · GBSt George’s University Hospitals NHS Foundation Trust · GBAntwerp University Hospital · BEBelfast City Hospital · GBCentre Hospitalier Universitaire de Saint-Étienne · FRHôpital Jean-Verdier · FRHospital Universitario Reina Sofía · ESOslo University Hospital · NOQueen Fabiola Children's University Hospital · BERoyal Hospital for Children · GBSheffield Children's Hospital · GBSt Mary's Hospital · GBUniversity Hospital Southampton NHS Foundation Trust · GBUniversity of Oxford · GB

Funding

Department of HealthMedical Research Council MC_PC_U127527199Medical Research Council MC_PC_U127561093Medical Research Council MC_U127527199Medical Research Council MC_U127561093Medical Research Council MC_UP_1502/3Medical Research Council MR/K01563X/1Medical Research Council MR/M02122X/1Wellcome TrustWellcome Trust WT098051
6 · The paper itself

Abstract

Gillespie syndrome (GS) is characterized by bilateral iris hypoplasia, congenital hypotonia, non-progressive ataxia, and progressive cerebellar atrophy. Trio-based exome sequencing identified de novo mutations in ITPR1 in three unrelated individuals with GS recruited to the Deciphering Developmental Disorders study. Whole-exome or targeted sequence analysis identified plausible disease-causing ITPR1 mutations in 10/10 additional GS-affected individuals. These ultra-rare protein-altering variants affected only three residues in ITPR1: Glu2094 missense (one de novo, one co-segregating), Gly2539 missense (five de novo, one inheritance uncertain), and Lys2596 in-frame deletion (four de novo). No clinical or radiological differences were evident between individuals with different mutations. ITPR1 encodes an inositol 1,4,5-triphosphate-responsive calcium channel. The homo-tetrameric structure has been solved by cryoelectron microscopy. Using estimations of the degree of structural change induced by known recessive- and dominant-negative mutations in other disease-associated multimeric channels, we developed a generalizable computational approach to indicate the likely mutational mechanism. This analysis supports a dominant-negative mechanism for GS variants in ITPR1. In GS-derived lymphoblastoid cell lines (LCLs), the proportion of ITPR1-positive cells using immunofluorescence was significantly higher in mutant than control LCLs, consistent with an abnormality of nuclear calcium signaling feedback control. Super-resolution imaging supports the existence of an ITPR1-lined nucleoplasmic reticulum. Mice with Itpr1 heterozygous null mutations showed no major iris defects. Purkinje cells of the cerebellum appear to be the most sensitive to impaired ITPR1 function in humans. Iris hypoplasia is likely to result from either complete loss of ITPR1 activity or structure-specific disruption of multimeric interactions.

Indexed as

AdolescentAdultAnimalsAniridiaCells, CulturedCerebellar AtaxiaChildFemaleGenes, DominantHumansInositol 1,4,5-Trisphosphate ReceptorsIntellectual DisabilityLymphocytesMaleMiceMicroscopy, ConfocalInositol 1,4,5-Trisphosphate ReceptorsITPR1 protein, humanACTA2aniridiacalciumcerebellar ataxiacerebellar hypoplasiacerebellar vermisinositol triphosphateirisITPR1

Identifiers

PMID27108798
PMCPMC4863663
OpenAlexW2336702220

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.