Evidence map›Paper›PMID 27107964›Full record

ArticleMicrobial cell factories2016

Light-induced gene expression with photocaged IPTG for induction profiling in a high-throughput screening system.

Georg Wandrey, Claus Bier, Dennis Binder, Kyra Hoffmann, Karl-Erich Jaeger, Jörg Pietruszka, Thomas Drepper, Jochen Büchs

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 40 citations in OpenAlex.

  1. Biomanufacturing Potential of Streamlined Cells.Biotechnology and bioengineering · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Georg WandreyAVT-Biochemical Engineering, RWTH Aachen University, Worringerweg 1, Aachen, 52074, Germany.
Claus BierInstitute of Bioorganic Chemistry, Heinrich-Heine-University Düsseldorf, Forschungszentrum Jülich, Jülich, 52426, Germany.
Dennis BinderInstitute of Molecular Enzyme Technology, Heinrich-Heine-University Düsseldorf, Forschungszentrum Jülich, Jülich, 52426, Germany.
Kyra HoffmannAVT-Biochemical Engineering, RWTH Aachen University, Worringerweg 1, Aachen, 52074, Germany.
Karl-Erich JaegerInstitute of Molecular Enzyme Technology, Heinrich-Heine-University Düsseldorf, Forschungszentrum Jülich, Jülich, 52426, Germany.
Jörg PietruszkaInstitute of Bioorganic Chemistry, Heinrich-Heine-University Düsseldorf, Forschungszentrum Jülich, Jülich, 52426, Germany.
Thomas DrepperInstitute of Molecular Enzyme Technology, Heinrich-Heine-University Düsseldorf, Forschungszentrum Jülich, Jülich, 52426, Germany.
Jochen BüchsAVT-Biochemical Engineering, RWTH Aachen University, Worringerweg 1, Aachen, 52074, Germany. jochen.buechs@avt.rwth-aachen.de.
Forschungszentrum Jülich · DERWTH Aachen University · DEHeinrich Heine University Düsseldorf · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundInducible expression systems are frequently used for the production of heterologous proteins. Achieving maximum product concentrations requires induction profiling, namely the optimization of induction time and inducer concentration. However, the respective experiments can be very laborious and time-consuming. In this work, a new approach for induction profiling is presented where induction in a microtiter plate based cultivation system (BioLector) is achieved by light using photocaged isopropyl β-D-1-thiogalactopyranoside (cIPTG).

resultsA flavin mononucleotide-based fluorescent reporter protein (FbFP) was expressed using a T7-RNA-polymerase dependent E. coli expression system which required IPTG as inducer. High power UV-A irradiation was directed into a microtiter plate by light-emitting diodes placed above each well of a 48-well plate. Upon UV irradiation, IPTG is released (uncaged) and induces product formation. IPTG uncaging, formation of the fluorescent reporter protein and biomass growth were monitored simultaneously in up to four 48-well microtiter plates in parallel with an in-house constructed BioLector screening system. The amount of released IPTG can be gradually and individually controlled for each well by duration of UV-A exposure, irradiance and concentration of photocaged IPTG added at the start of the cultivation. A comparison of experiments with either optical or conventional IPTG induction shows that product formation and growth are equivalent. Detailed induction profiles revealed that for the strain and conditions used maximum product formation is reached for very early induction times and with just 6-8 s of UV-A irradiation or 60-80 µM IPTG.

conclusionsOptical induction and online monitoring were successfully combined in a high-throughput screening system and the effect of optical induction with photocaged IPTG was shown to be equivalent to conventional induction with IPTG. In contrast to conventional induction, optical induction is less costly to parallelize, easy to automate, non-invasive and without risk of contamination. Therefore, light-induced gene expression with photocaged IPTG is a highly advantageous method for the efficient optimization of heterologous protein production and has the potential to replace conventional induction with IPTG.

Indexed as

Escherichia coliGene Expression Regulation, BacterialBacteriological TechniquesDNA-Directed RNA PolymerasesGene Expression ProfilingHigh-Throughput Screening AssaysIndustrial MicrobiologyIsopropyl ThiogalactosideLightViral Proteinsbacteriophage T7 RNA polymeraseDNA-Directed RNA PolymerasesIsopropyl ThiogalactosideViral ProteinsAutomatizationBioLectorCaged compoundsEscherichia coliFbFPHigh-throughput screeningInduction profilingLED arrayOptical inductionPhotocaged IPTGRecombinant protein expressionShaken microtiter plate

Identifiers

PMID27107964
PMCPMC4842301
OpenAlexW2338430451

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.