Evidence map›Paper›PMID 27107641›Full record

ArticleJournal of molecular biology2016

DHX9/RHA Binding to the PBS-Segment of the Genomic RNA during HIV-1 Assembly Bolsters Virion Infectivity.

Ioana Boeras, Zhenwei Song, Andrew Moran, Jarryd Franklin, William Clay Brown, Marc Johnson, Kathleen Boris-Lawrie, Xiao Heng

Abstract read
In one paragraph

Article in Journal of molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

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  11. HIV-1 hypermethylated guanosine cap licenses specialized translation unaffected by mTOR.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ioana BoerasDepartment of Veterinary and Biomedical Sciences, University of Minnesota, Saint Paul, MN 55108, USA.
Zhenwei SongDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA.
Andrew MoranDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA.
Jarryd FranklinDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA.
William Clay BrownCenter for Structural Biology, Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA.
Marc JohnsonDepartment of Molecular Microbiology and Immunology, University of Missouri, Columbia, MO 65211, USA.
Kathleen Boris-LawrieDepartment of Veterinary and Biomedical Sciences, University of Minnesota, Saint Paul, MN 55108, USA. Electronic address: kbl@umn.edu.
Xiao HengDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA. Electronic address: hengx@missouri.edu.

Funding

The Center for HIV RNA Studies (CRNA)P50GM103297 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DAYIE, KWAKU · 2012 to 2016
$21.7M
NIGMS NIH HHS P50 GM103297
6 · The paper itself

Abstract

Cellular RNA-binding proteins incorporated into virions during human immunodeficiency virus type 1 (HIV-1) assembly promote the replication efficiency of progeny virions. Despite its critical role in bolstering virion infectivity, the molecular basis for the incorporation of DHX9/RNA helicase A (RHA) to virions remains unclear. Here, cell-based experiments demonstrate that the truncation of segments of the HIV-1 5'-untranslated region (5'-UTR) distinct from the core encapsidation sequence eliminated virion incorporation of RHA, indicating that RHA recruitment is mediated by specific interactions with the HIV-1 5'-UTR. In agreement with biological data, isothermal titration calorimetry determined that the dimer conformation of the 5'-UTR binds one RHA molecule per RNA strand, and the interaction is independent of nucleocapsid protein binding. NMR spectra employing a deuterium-labeling approach enabled resolution of the dimeric 5'-UTR in complex with the RHA N-terminal domain. The structure of the large molecular mass complex was dependent on RHA binding to a double-stranded region of the primer binding site (PBS)-segment of the 5'-UTR. A single A-to-C substitution was sufficient to disrupt biophysical conformation and attenuate virion infectivity in cell-based assays. Taken together, our studies demonstrate the structural basis for HIV-1 genomic RNA to recruit beneficial cellular cofactor to virions. The support of progeny virion infectivity by RHA is attributable to structure-dependent binding at the PBS-segment of the HIV-1 5'-UTR during virus assembly.

Indexed as

5' Untranslated RegionsBinding SitesDEAD-box RNA HelicasesDNA PrimersGenomicsHIV-1HIV InfectionsHumansNeoplasm ProteinsRNA, ViralVirionVirus AssemblyVirus Replication5' Untranslated RegionsDEAD-box RNA HelicasesDHX9 protein, humanDNA PrimersNeoplasm ProteinsRNA, Viraldimeric 5′-UTRNMRPBS-segmentRNA-binding domainvirus infectivity

Identifiers

PMID27107641
PMCPMC4884555

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.