Evidence map›Paper›PMID 27106499›Full record

ArticleMolecular genetics and genomics : MGG2016

The 5S rDNA in two Abracris grasshoppers (Ommatolampidinae: Acrididae): molecular and chromosomal organization.

Danilo Bueno, Octavio Manuel Palacios-Gimenez, Dardo Andrea Martí, Tatiane Casagrande Mariguela, Diogo Cavalcanti Cabral-de-Mello

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Danilo BuenoDepartamento de Biologia, Instituto de Biociências/IB, UNESP, Univ Estadual Paulista, Rio Claro, São Paulo, CEP 13506-900, Brazil.
Octavio Manuel Palacios-GimenezDepartamento de Biologia, Instituto de Biociências/IB, UNESP, Univ Estadual Paulista, Rio Claro, São Paulo, CEP 13506-900, Brazil.
Dardo Andrea MartíLaboratorio de Genética Evolutiva, IBS, Facultad de Ciencias Exactas, Químicas y Naturales, CONICET, Universidad Nacional de Misiones, 3300, Posadas, Argentina.
Tatiane Casagrande MariguelaDepartamento de Zoologia, Instituto de Biociências/IB, UNESP, Univ Estadual Paulista, Rio Claro, São Paulo, Brazil.
Diogo Cavalcanti Cabral-de-MelloDepartamento de Biologia, Instituto de Biociências/IB, UNESP, Univ Estadual Paulista, Rio Claro, São Paulo, CEP 13506-900, Brazil. mellodc@rc.unesp.br.
Universidade Estadual Paulista (Unesp) · BRNational University of Misiones · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 5S ribosomal DNA (rDNA) sequences are subject of dynamic evolution at chromosomal and molecular levels, evolving through concerted and/or birth-and-death fashion. Among grasshoppers, the chromosomal location for this sequence was established for some species, but little molecular information was obtained to infer evolutionary patterns. Here, we integrated data from chromosomal and nucleotide sequence analysis for 5S rDNA in two Abracris species aiming to identify evolutionary dynamics. For both species, two arrays were identified, a larger sequence (named type-I) that consisted of the entire 5S rDNA gene plus NTS (non-transcribed spacer) and a smaller (named type-II) with truncated 5S rDNA gene plus short NTS that was considered a pseudogene. For type-I sequences, the gene corresponding region contained the internal control region and poly-T motif and the NTS presented partial transposable elements. Between the species, nucleotide differences for type-I were noticed, while type-II was identical, suggesting pseudogenization in a common ancestor. At chromosomal point to view, the type-II was placed in one bivalent, while type-I occurred in multiple copies in distinct chromosomes. In Abracris, the evolution of 5S rDNA was apparently influenced by the chromosomal distribution of clusters (single or multiple location), resulting in a mixed mechanism integrating concerted and birth-and-death evolution depending on the unit.

Indexed as

AnimalsChromosome MappingChromosomesDNA, RibosomalEvolution, MolecularFemaleGrasshoppersMalePseudogenesRNA, Ribosomal, 5SSequence Analysis, DNASequence Analysis, ProteinDNA, RibosomalRNA, Ribosomal, 5SFISHGenomeMultigene familyNon-transcribed spacerRepetitive DNAs

Identifiers

PMID27106499
OpenAlexW2472543637

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.