Evidence map›Paper›PMID 27105840›Full record

ArticleNucleic acids research2016

A 10S galectin-3-U1 snRNP complex assembles into active spliceosomes.

Kevin C Haudek, Patricia G Voss, John L Wang, Ronald J Patterson

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kevin C HaudekDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
Patricia G VossDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
John L WangDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
Ronald J PattersonDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA patter13@msu.edu.
Michigan State University · US

Funding

CARBOHYDRATE-BINDING PROTEIN 35R01GM038740 · NIGMS · MICHIGAN STATE UNIVERSITY · PI WANG, JOHN L · 1988 to 2006
$1.3M
NIGMS NIH HHS R01 GM038740
6 · The paper itself

Abstract

In previous studies, we reported that fractionation of HeLa cell nuclear extracts on glycerol gradients revealed an endogenous ∼10S particle that contained galectin-3 and U1 snRNP and this particle was sufficient to load the galectin polypeptide onto a pre-mRNA substrate. We now document that this interaction between the galectin-3-U1 snRNP particle and the pre-mRNA results in a productive spliceosomal complex, leading to intermediates and products of the splicing reaction. Nuclear extracts were depleted of U1 snRNP with a concomitant loss of splicing activity. Splicing activity in the U1-depleted extract can be reconstituted by the galectin-3-U1 snRNP particle, isolated by immunoprecipitation of the 10S region (fractions 3-5) of the glycerol gradient with anti-galectin-3 antibodies. In contrast, parallel anti-galectin-3 immunoprecipitation of free galectin-3 molecules not in a complex with U1 snRNP (fraction 1 of the same gradient), failed to restore splicing activity. These results indicate that the galectin-3-U1 snRNP-pre-mRNA ternary complex is a functional E complex and that U1 snRNP is required to assemble galectin-3 onto an active spliceosome.

Indexed as

Blood ProteinsCell ExtractsCell-Free SystemCell NucleusGalectin 3GalectinsHeLa CellsHumansRibonucleoprotein, U1 Small NuclearRNA PrecursorsRNA SplicingSpliceosomesBlood ProteinsCell ExtractsGalectin 3GalectinsLGALS3 protein, humanRibonucleoprotein, U1 Small NuclearRNA Precursors

Identifiers

PMID27105840
PMCPMC5291251
OpenAlexW2342323529

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.