Evidence map›Paper›PMID 27105737›Full record

ArticleJournal of virological methods2016

Development of a SYBR green I-based quantitative RT-PCR for Ross River virus: Application in vector competence studies and antiviral drug evaluation.

Paban Kumar Dash, Ankita Agarwal, Shashi Sharma, Amrita Saha, Gaurav Joshi, Natarajan Gopalan, Devanathan Sukumaran, Man Mohan Parida

Open access · greenAbstract read
In one paragraph

Article in Journal of virological methods, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  3. Microbiology spectrum · 2023
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  5. Antiviral activity of cationic amphiphilic drugs.Expert review of anti-infective therapy · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Paban Kumar DashDivision of Virology, Defence R and D Establishment, Jhansi Road, Gwalior 474 002, M.P., India. Electronic address: pabandash@drde.drdo.in.
Ankita AgarwalDivision of Virology, Defence R and D Establishment, Jhansi Road, Gwalior 474 002, M.P., India.
Shashi SharmaDivision of Virology, Defence R and D Establishment, Jhansi Road, Gwalior 474 002, M.P., India.
Amrita SahaDivision of Virology, Defence R and D Establishment, Jhansi Road, Gwalior 474 002, M.P., India.
Gaurav JoshiDivision of Virology, Defence R and D Establishment, Jhansi Road, Gwalior 474 002, M.P., India.
Natarajan GopalanVector Management Division, Defence R and D Establishment, Jhansi Road, Gwalior 474 002, M.P., India.
Devanathan SukumaranVector Management Division, Defence R and D Establishment, Jhansi Road, Gwalior 474 002, M.P., India.
Man Mohan ParidaDivision of Virology, Defence R and D Establishment, Jhansi Road, Gwalior 474 002, M.P., India.
Defence Research and Development Establishment · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ross River virus (RRV) is an emerging Alphavirus and is presently endemic in many parts of Oceania. Keeping in mind its emergence, we developed a molecular detection system and utilized it to study vector competence and evaluate activity of antiviral compounds against RRV. A SYBR Green I-based quantitative RT-PCR for detection of RRV was developed targeting the E2 gene, with a detection limit of 100 RNA copies/reaction. The specificity was confirmed with closely related Alphaviruses and Flaviviruses. The assay was applied to study the vector competence of Indian Aedes aegypti for RRV, which revealed 100% infection and dissemination rate with 75% transmission rate. Viral RNA was found in saliva as early as 3day post infection (dpi). Further application of the assay in antiviral drug evaluation revealed the superior in vitro activity of ribavirin compared to chloroquine in Vero cells. Successful demonstration of this assay to detect RRV in low titre mosquito samples makes it a sensitive tool in vector surveillance. This study also showed that Indian Ae. aegypti are well competent to transmit RRV highlighting the risk of its introduction to naïve territories across continents. Further validation of this assay, revealed its utility in screening of potential antivirals against RRV.

Indexed as

AedesAlphavirus InfectionsAnimalsAntimalarialsAntiviral AgentsBenzothiazolesChlorocebus aethiopsChloroquineDiaminesHumansInsect VectorsMicrobial Sensitivity TestsOrganic ChemicalsQuinolinesReal-Time Polymerase Chain ReactionRibavirinAntimalarialsAntiviral AgentsBenzothiazolesChloroquineDiaminesOrganic ChemicalsQuinolinesRibavirinRNA, ViralSYBR Green IAntiviralReal time RT-PCRRRVVector competence

Identifiers

PMID27105737
PMCPMC7119768
OpenAlexW2339083562

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.