Evidence map›Paper›PMID 27105349›Full record

ArticlePloS one2016

SRPK1 and Akt Protein Kinases Phosphorylate the RS Domain of Lamin B Receptor with Distinct Specificity: A Combined Biochemical and In Silico Approach.

Nikolaos Voukkalis, Maria Koutroumani, Christoforos Zarkadas, Eleni Nikolakaki, Metaxia Vlassi, Thomas Giannakouros

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Nikolaos VoukkalisLaboratory of Biochemistry, Department of Chemistry, Aristotle University, Thessaloniki, Greece.
Maria KoutroumaniLaboratory of Biochemistry, Department of Chemistry, Aristotle University, Thessaloniki, Greece.
Christoforos ZarkadasInstitute of Biosciences & Applications, National Centre for Scientific Research "Demokritos", Athens, Greece.
Eleni NikolakakiLaboratory of Biochemistry, Department of Chemistry, Aristotle University, Thessaloniki, Greece.
Metaxia VlassiInstitute of Biosciences & Applications, National Centre for Scientific Research "Demokritos", Athens, Greece.
Thomas GiannakourosLaboratory of Biochemistry, Department of Chemistry, Aristotle University, Thessaloniki, Greece.
Aristotle University of Thessaloniki · GRNational Centre of Scientific Research "Demokritos" · GR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Activated Akt has been previously implicated in acting on RS domain-containing proteins. However, it has been questioned whether its action is direct or it is mediated by co-existing SR kinase activity. To address this issue we studied in detail the phosphorylation of Lamin B Receptor (LBR) by Akt. Using synthetic peptides and a set of recombinant proteins expressing mutants of the LBR RS domain we now demonstrate that while all serines of the RS domain represent more or less equal phosphoacceptor sites for SRPK1, Ser80 and Ser82 are mainly targeted by Akt. 3D-modeling combined with molecular dynamics (MD) simulations show that amongst short, overlapping LBR RS-containing peptides complying with the minimum Akt recognition consensus sequence, only those bearing phosphosites either at Ser80 or Ser82 are able to fit into the active site of Akt, at least as effectively as its known substrate, GSK3-β. Combined our results provide evidence that Akt kinases directly phosphorylate an RS domain-containing protein and that both the residues N-terminal the phosphosite and at position +1 are essential for Akt specificity, with the latter substrate position being compatible with the arginine residue of RS-repeats.

Indexed as

Amino Acid SequenceAnimalsArginineBinding SitesGlycogen Synthase Kinase 3 betaHEK293 CellsHumansImmunoblottingLamin B ReceptorMolecular Dynamics SimulationMutationPeptidesPhosphorylationProtein BindingProtein DomainsProtein Serine-Threonine KinasesArginineGlycogen Synthase Kinase 3 betaLamin B ReceptorPeptidesProtein Serine-Threonine KinasesProto-Oncogene Proteins c-aktReceptors, Cytoplasmic and NuclearSerineSRPK1 protein, human

Identifiers

PMID27105349
PMCPMC4841541
OpenAlexW2341876793

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.