Evidence map›Paper›PMID 27105113›Full record

ArticleMolecular cell2016

Dynamic Competing Histone H4 K5K8 Acetylation and Butyrylation Are Hallmarks of Highly Active Gene Promoters.

Afsaneh Goudarzi, Di Zhang, He Huang, Sophie Barral, Oh Kwang Kwon, Shankang Qi, Zhanyun Tang, Thierry Buchou, Anne-Laure Vitte, Tieming He and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 165 papers.

0numbers the graph read from it
0cells of the map it votes in
165citing papers in PubMed
15.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

165 citing papers in PubMed, 267 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Biochemistry and regulation of histone lysine L-lactylation.Nature reviews. Molecular cell biology · 2026
    Review
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  11. Article
  12. IGF2BP3 recognizes mThe EMBO journal · 2026
    Article
  13. Epigenetic alterations in Myeloid Malignancies.Advances in experimental medicine and biology · 2026
    Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review

105 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 2 countries.

Afsaneh GoudarziCNRS UMR 5309, INSERM, U1209, Université Grenoble Alpes, Institut Albert Bonniot, 38700 Grenoble, France.
Di ZhangBen May Department of Cancer Research, The University of Chicago, Chicago, IL 60637, USA.
He HuangBen May Department of Cancer Research, The University of Chicago, Chicago, IL 60637, USA.
Sophie BarralCNRS UMR 5309, INSERM, U1209, Université Grenoble Alpes, Institut Albert Bonniot, 38700 Grenoble, France.
Oh Kwang KwonBen May Department of Cancer Research, The University of Chicago, Chicago, IL 60637, USA.
Shankang QiBen May Department of Cancer Research, The University of Chicago, Chicago, IL 60637, USA.
Zhanyun TangLaboratory of Biochemistry and Molecular Biology, The Rockefeller University, New York, NY 10065, USA.
Thierry BuchouCNRS UMR 5309, INSERM, U1209, Université Grenoble Alpes, Institut Albert Bonniot, 38700 Grenoble, France.
Anne-Laure VitteCNRS UMR 5309, INSERM, U1209, Université Grenoble Alpes, Institut Albert Bonniot, 38700 Grenoble, France.
Tieming HeJingjie PTM Biolab (Hangzhou) Co., Ltd., Hangzhou 310018, China.
Zhongyi ChengJingjie PTM Biolab (Hangzhou) Co., Ltd., Hangzhou 310018, China.
Emilie MontellierCNRS UMR 5309, INSERM, U1209, Université Grenoble Alpes, Institut Albert Bonniot, 38700 Grenoble, France.
Jonathan GaucherCNRS UMR 5309, INSERM, U1209, Université Grenoble Alpes, Institut Albert Bonniot, 38700 Grenoble, France; EMBL Grenoble, BP 181, 71 Avenue des Martyrs, 38042 Grenoble Cedex 9, France.
Sandrine CurtetCNRS UMR 5309, INSERM, U1209, Université Grenoble Alpes, Institut Albert Bonniot, 38700 Grenoble, France.
Alexandra DebernardiCNRS UMR 5309, INSERM, U1209, Université Grenoble Alpes, Institut Albert Bonniot, 38700 Grenoble, France.
Guillaume CharbonnierTAGC, UMR, S 1090 INSERM Aix-Marseille Université, U928 Parc Scientifique de Luminy case 928 163, Avenue de Luminy, 13288 Marseille Cedex 9, France.
Denis PuthierTAGC, UMR, S 1090 INSERM Aix-Marseille Université, U928 Parc Scientifique de Luminy case 928 163, Avenue de Luminy, 13288 Marseille Cedex 9, France.
Carlo PetosaUniversité Grenoble Alpes/CEA/CNRS, Institut de Biologie Structurale, 38027 Grenoble, France.
Daniel PanneEMBL Grenoble, BP 181, 71 Avenue des Martyrs, 38042 Grenoble Cedex 9, France.
Sophie RousseauxCNRS UMR 5309, INSERM, U1209, Université Grenoble Alpes, Institut Albert Bonniot, 38700 Grenoble, France.
Robert G RoederLaboratory of Biochemistry and Molecular Biology, The Rockefeller University, New York, NY 10065, USA.
Yingming ZhaoBen May Department of Cancer Research, The University of Chicago, Chicago, IL 60637, USA. Electronic address: yzhao2@bsd.uchicago.edu.
Saadi KhochbinCNRS UMR 5309, INSERM, U1209, Université Grenoble Alpes, Institut Albert Bonniot, 38700 Grenoble, France. Electronic address: saadi.khochbin@univ-grenoble-alpes.fr.
University of Chicago · USInserm · FRUniversité Grenoble Alpes · FRCentre d’Immunologie de Marseille-Luminy · FRCentre National de la Recherche Scientifique · FRInstitut pour l'avancée des biosciences · FRRockefeller University · USEuropean Molecular Biology Laboratory · FR

Funding

Nuclear Receptor Coactivator Functions and MechanismsR01DK071900 · NIDDK · ROCKEFELLER UNIVERSITY · PI ROEDER, ROBERT G · 2005 to 2015
$5.9M
Functional and Mechanistic Study of Histone Crotonylation in Hematological MalignanciesR01CA204639 · NCI · ROCKEFELLER UNIVERSITY · PI ALLIS, CHARLES DAVID, ARMSTRONG, SCOTT A · 2016 to 2020
$3.5M
SIRT6 and lysine fatty acylation in macrophage inflammationR01DK107868 · NIDDK · CORNELL UNIVERSITY · PI LIN, HENING, ZHAO, YINGMING · 2016 to 2019
$2.0M
Systems-wide analysis of histone lysine 2-hydroxyisobutyrylation pathwayR01GM115961 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHAO, YINGMING · 2016 to 2019
$1.8M
Biochemistry of lysine crotonylation pathwayR01GM105933 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHAO, YINGMING · 2013 to 2016
$1.7M
NCI NIH HHS R01 CA204639NIDDK NIH HHS R01 DK071900NIDDK NIH HHS R01 DK107868NIGMS NIH HHS R01 GM105933NIGMS NIH HHS R01 GM115961
6 · The paper itself

Abstract

Recently discovered histone lysine acylation marks increase the functional diversity of nucleosomes well beyond acetylation. Here, we focus on histone butyrylation in the context of sperm cell differentiation. Specifically, we investigate the butyrylation of histone H4 lysine 5 and 8 at gene promoters where acetylation guides the binding of Brdt, a bromodomain-containing protein, thereby mediating stage-specific gene expression programs and post-meiotic chromatin reorganization. Genome-wide mapping data show that highly active Brdt-bound gene promoters systematically harbor competing histone acetylation and butyrylation marks at H4 K5 and H4 K8. Despite acting as a direct stimulator of transcription, histone butyrylation competes with acetylation, especially at H4 K5, to prevent Brdt binding. Additionally, H4 K5K8 butyrylation also marks retarded histone removal during late spermatogenesis. Hence, alternating H4 acetylation and butyrylation, while sustaining direct gene activation and dynamic bromodomain binding, could impact the final male epigenome features.

Indexed as

Epigenesis, GeneticGene Expression Regulation, DevelopmentalPromoter Regions, GeneticProtein Processing, Post-TranslationalAcetylationAnimalsBinding SitesBromodomain Containing ProteinsButyratesCell DifferentiationChromatin Assembly and DisassemblyGenome-Wide Association StudyHistonesLysineMaleMiceBRDT protein, mouseBromodomain Containing ProteinsButyratesHistonesLysineNuclear Proteins

Identifiers

PMID27105113
PMCPMC4850424
OpenAlexW2339716966

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.