Evidence map›Paper›PMID 27104820›Full record

SynthesisInflammatory bowel diseases2016

TNFRSF1B Is Associated with ANCA in IBD.

Dalin Li, Mark S Silverberg, Talin Haritunians, Marla C Dubinsky, Carol Landers, Joanne M Stempak, Raquel Milgrom, Xiuqing Guo, Yii-Der Ida Chen, Jerome I Rotter and 3 more

Open access · bronzeAbstract readMeta-AnalysisValidation Study
In one paragraph

Synthesis in Inflammatory bowel diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Association ofFrontiers in immunology · 2018
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Dalin Li*Department of Medicine, F. Widjaja Foundation Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center, Los Angeles, California; †Mount Sinai Hospital, Toronto, Ontario, Canada; ‡The Susan and Leonard Feinstein IBD Clinical Center, East New York, New York; and §Institute for Translational Genomics and Population Science, Los Angeles Biomedical Research Institute and Department of Pediatrics, Harbor-UCLA Medical Center, Torrance, California.
Mark S Silverberg
Talin Haritunians
Marla C Dubinsky
Carol Landers
Joanne M Stempak
Raquel Milgrom
Xiuqing Guo
Yii-Der Ida Chen
Jerome I Rotter
Kent D Taylor
Dermot P B McGovern
Stephan R Targan
Cedars-Sinai Medical Center · USMount Sinai Hospital · CAThe Lundquist Institute · USFeinstein Institute for Medical Research · USHarbor–UCLA Medical Center · US

Funding

Using polygenic scores to enhance both variant discovery, and understanding of functional consequences of genetic variation in IBD.P01DK046763 · NIDDK · CEDARS-SINAI MEDICAL CENTER · PI TARGAN, STEPHAN R. · 1992 to 2020
$31.1M
Impact of Genetic Variability on Cellular Pathways and Host-Microbiome InteractioU01DK062423 · NIDDK · SINAI HEALTH SYSTEM · PI MARK S. SILVERBERG · 2002 to 2026
$7.5M
Identify Serological Markers defined subgroups in CD patients using Bigdata toolsR21DK108140 · NIDDK · CEDARS-SINAI MEDICAL CENTER · PI LI, DALIN · 2016 to 2017
$481k
NIDDK NIH HHS P01 DK046763NIDDK NIH HHS R21 DK108140NIDDK NIH HHS U01 DK062423
6 · The paper itself

Abstract

The genetic basis of antineutrophil cytoplasmic antibody, an important biomarker of inflammatory bowel disease (IBD), has never been thoroughly examined on a genome-wide scale. In this study, we performed a 2-stage genome-wide association study (GWAS) on antineutrophil cytoplasmic antibody in IBD cases. In the 2959 IBD cases in the discovery stage, we observed an association between a variant in the gene TNFRSF1B with antineutrophil cytoplasmic antibody level (rs5745994, minor allele frequency = 0.028, beta = 18.12, 95% CI, 11.82-24.22, P = 1.89 × 10). This association was replicated in an independent cohort of 419 IBD cases (beta = 16.91, 95% CI, 6.13-27.69, P = 2.38 × 10). With a Q-value of 0.036, we performed a fixed-effect meta-analysis for the association of rs5745994 in both cohorts and observed a stronger association signal (beta = 17.81, 95% CI, 12.36-23.25, P = 8.97 × 10). TNFRSF1B gene codes for tumor necrosis factor (TNF) receptor 2 (TNFR2), thereby we examined the reported TNFRSF1B variant with serum TNFR2 level. We observed a negative association with serum TNFR2 level being 8.23 EU/mL in carriers and 9.12 EU/mL in noncarriers (P = 0.033). This finding indicates the functional role of identified TNFRSF1B variant in IBD serology and may be reflective of the underlying biological mechanisms that determine clinical expression and/or response to certain therapies.

Indexed as

AdolescentAdultAntibodies, Antineutrophil CytoplasmicChildColitis, UlcerativeCrohn DiseaseFemaleGenome-Wide Association StudyHeterozygoteHumansInflammatory Bowel DiseasesMaleReceptors, Tumor Necrosis Factor, Type IIYoung AdultAntibodies, Antineutrophil CytoplasmicReceptors, Tumor Necrosis Factor, Type IITNFRSF1B protein, human

Identifiers

PMID27104820
PMCPMC7288902
OpenAlexW2338316824

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.