Evidence map›Paper›PMID 27102684›Full record

ArticleNature chemistry2016

Carbon-sulfur bond-forming reaction catalysed by the radical SAM enzyme HydE.

Roman Rohac, Patricia Amara, Alhosna Benjdia, Lydie Martin, Pauline Ruffié, Adrien Favier, Olivier Berteau, Jean-Marie Mouesca, Juan C Fontecilla-Camps, Yvain Nicolet

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 79 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Functional Diversity of HemN-like Proteins.ACS bio & med chem Au · 2022
    Review
  8. Journal of the American Chemical Society · 2022
    Article
  9. Review
  10. Review
  11. Article
  12. Biosynthesis of the [FeFe] hydrogenase H-clusterDalton transactions (Cambridge, England : 2003) · 2021
    Review
  13. HydG, the "dangler" iron, and catalytic production of free CO and CNDalton transactions (Cambridge, England : 2003) · 2021
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. [FeFe]-hydrogenase maturation: H-cluster assembly intermediates tracked by electron paramagnetic resonance, infrared, and X-ray absorption spectroscopy.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 1 country.

Roman RohacMetalloproteins Unit, Institut de Biologie Structurale, CEA, CNRS, UGA, 71 Avenue des Martyrs, 38044 Grenoble Cedex 9, France.
Patricia AmaraMetalloproteins Unit, Institut de Biologie Structurale, CEA, CNRS, UGA, 71 Avenue des Martyrs, 38044 Grenoble Cedex 9, France.
Alhosna BenjdiaMicalis Institute, ChemSyBio, INRA, AgroParisTech, Université Paris-Saclay, F-78350 Jouy-en-Josas, France.
Lydie MartinMetalloproteins Unit, Institut de Biologie Structurale, CEA, CNRS, UGA, 71 Avenue des Martyrs, 38044 Grenoble Cedex 9, France.
Pauline RuffiéMicalis Institute, ChemSyBio, INRA, AgroParisTech, Université Paris-Saclay, F-78350 Jouy-en-Josas, France.
Adrien FavierBiomolecular NMR Spectroscopy Group, Institut de Biologie Structurale, CEA, CNRS, UGA, 71 Avenue des Martyrs, 38044 Grenoble Cedex 9, France.
Olivier BerteauMicalis Institute, ChemSyBio, INRA, AgroParisTech, Université Paris-Saclay, F-78350 Jouy-en-Josas, France.
Jean-Marie MouescaUniversité Grenoble Alpes, INAC, SCIB/LRM, F-38000 Grenoble, France.
Juan C Fontecilla-CampsMetalloproteins Unit, Institut de Biologie Structurale, CEA, CNRS, UGA, 71 Avenue des Martyrs, 38044 Grenoble Cedex 9, France.
Yvain NicoletMetalloproteins Unit, Institut de Biologie Structurale, CEA, CNRS, UGA, 71 Avenue des Martyrs, 38044 Grenoble Cedex 9, France.
AgroParisTech · FRCentre National de la Recherche Scientifique · FRInstitut de Biologie Structurale · FRCEA Grenoble · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRUniversité Grenoble Alpes · FRUniversité Paris-Saclay · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carbon-sulfur bond formation at aliphatic positions is a challenging reaction that is performed efficiently by radical S-adenosyl-L-methionine (SAM) enzymes. Here we report that 1,3-thiazolidines can act as ligands and substrates for the radical SAM enzyme HydE, which is involved in the assembly of the active site of [FeFe]-hydrogenase. Using X-ray crystallography, in vitro assays and NMR spectroscopy we identified a radical-based reaction mechanism that is best described as the formation of a C-centred radical that concomitantly attacks the sulfur atom of a thioether. To the best of our knowledge, this is the first example of a radical SAM enzyme that reacts directly on a sulfur atom instead of abstracting a hydrogen atom. Using theoretical calculations based on our high-resolution structures we followed the evolution of the electronic structure from SAM through to the formation of S-adenosyl-L-cysteine. Our results suggest that, at least in this case, the widely proposed and highly reactive 5'-deoxyadenosyl radical species that triggers the reaction in radical SAM enzymes is not an isolable intermediate.

Indexed as

CarbonCatalysisCatalytic DomainClostridium acetobutylicumCysteineFree RadicalsLigandsModels, ChemicalOxidoreductases Acting on Sulfur Group DonorsQuantum TheoryS-AdenosylmethionineSulfurThermotoga maritimaThiazolidinesCarbonCysteineFree RadicalsLigandsOxidoreductases Acting on Sulfur Group DonorsS-AdenosylmethionineSulfurThiazolidines

Identifiers

PMID27102684
OpenAlexW2315121352

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.