Evidence map›Paper›PMID 27102350›Full record

ArticleScientific reports2016

Gene expression of Lactobacillus plantarum and the commensal microbiota in the ileum of healthy and early SIV-infected rhesus macaques.

Benjamin L Golomb, Lauren A Hirao, Satya Dandekar, Maria L Marco

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Utilization of Host-Derived Glycans by IntestinalFrontiers in microbiology · 2018
    Review
  8. A long and abundant non-coding RNA inMicrobial genomics · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Benjamin L GolombDepartment of Food Science and Technology, University of California, Davis, CA, USA.
Lauren A HiraoDepartment of Medical Microbiology and Immunology, University of California, Davis, CA, USA.
Satya DandekarDepartment of Medical Microbiology and Immunology, University of California, Davis, CA, USA.
Maria L MarcoDepartment of Food Science and Technology, University of California, Davis, CA, USA.
University of California, Davis · USUniversity of California Davis Medical Center · US

Funding

National Institute on Aging (NIA) ColonyP51OD011107 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Simon J. Atkinson · 2012 to 2026
$191.5M
INTESTINAL CYTOKINE &TCELL HOMEOSTASIS IN SIV INFECTIONR01AI043274 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI DANDEKAR, SATYA · 1998 to 2013
$5.1M
NIAID NIH HHS R01 AI043274NIH HHS P51 OD011107
6 · The paper itself

Abstract

Chronic HIV infection results in impairment of gut-associated lymphoid tissue leading to systemic immune activation. We previously showed that in early SIV-infected rhesus macaques intestinal dysfunction is initiated with the induction of the IL-1β pathway in the small intestine and reversed by treatment with an exogenous Lactobacillus plantarum strain. Here, we provide evidence that the transcriptomes of L. plantarum and ileal microbiota are not altered shortly after SIV infection. L. plantarum adapts to the small intestine by expressing genes required for tolerating oxidative stress, modifying cell surface composition, and consumption of host glycans. The ileal microbiota of L. plantarum-containing healthy and SIV+ rhesus macaques also transcribed genes for host glycan metabolism as well as for cobalamin biosynthesis. Expression of these pathways by bacteria were proposed but not previously demonstrated in the mammalian small intestine.

Indexed as

Gastrointestinal MicrobiomeGene Expression ProfilingAnimalsIleumLactiplantibacillus plantarumMacaca mulattaSimian Acquired Immunodeficiency Syndrome

Identifiers

PMID27102350
PMCPMC4840379
OpenAlexW2336418840

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.