Evidence map›Paper›PMID 27100890›Full record

ArticlePloS one2016

In Vitro Polarization of Colonoids to Create an Intestinal Stem Cell Compartment.

Peter J Attayek, Asad A Ahmad, Yuli Wang, Ian Williamson, Christopher E Sims, Scott T Magness, Nancy L Allbritton

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Guiding Principles: Reporting Elements for Gastrointestinal Organoid Research.Cellular and molecular gastroenterology and hepatology · 2026
    Guideline
  2. Article
  3. Review
  4. Review
  5. Listen to Your Gut: Key Concepts for Bioengineering Advanced Models of the Intestine.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Review
  6. Review
  7. How might we build limbsFrontiers in cell and developmental biology · 2023
    Review
  8. Review
  9. Review
  10. Engineering organoids.Nature reviews. Materials · 2021
    Review
  11. Review
  12. Engineered materials for organoid systems.Nature reviews. Materials · 2019
    Article
  13. Review
  14. Article
  15. Bioengineered Systems and Designer Matrices That Recapitulate the Intestinal Stem Cell Niche.Cellular and molecular gastroenterology and hepatology · 2018
    Review
  16. Article
  17. Gastrointestinal microphysiological systems.Experimental biology and medicine (Maywood, N.J.) · 2017
    Review
  18. The role of the microbiome in cancer development and therapy.CA: a cancer journal for clinicians · 2017
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Peter J AttayekDepartment of Biomedical Engineering, University of North Carolina, Chapel Hill, NC 27599 and North Carolina State University, Raleigh, NC, 27695, United States of America.
Asad A AhmadDepartment of Biomedical Engineering, University of North Carolina, Chapel Hill, NC 27599 and North Carolina State University, Raleigh, NC, 27695, United States of America.
Yuli WangDepartment of Chemistry, University of North Carolina, Chapel Hill, NC, 27599, United States of America.
Ian WilliamsonDepartment of Biomedical Engineering, University of North Carolina, Chapel Hill, NC 27599 and North Carolina State University, Raleigh, NC, 27695, United States of America.
Christopher E SimsDepartment of Chemistry, University of North Carolina, Chapel Hill, NC, 27599, United States of America.
Scott T MagnessDepartment of Medicine, Division of Gastroenterology and Hepatology, University of North Carolina, Chapel Hill, NC, 27599, United States of America.
Nancy L AllbrittonDepartment of Biomedical Engineering, University of North Carolina, Chapel Hill, NC 27599 and North Carolina State University, Raleigh, NC, 27695, United States of America.

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
PILOT AND FEASIBILITY STUDIESP30DK034987 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ROBERT S. SANDLER · 1985 to 2026
$30.5M
Single-Cell Measurement of Lipid Signaling in Colorectal CancerR01CA177993 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ALLBRITTON, NANCY L. · 2014 to 2018
$3.0M
Studying Colonic Stem-Cell Niche Using Microengineered Gradient-Generating DeviceF31CA183309 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI AHMAD, ASAD · 2014 to 2015
$62k
NCI NIH HHS CA177993NCI NIH HHS F31 CA183309NCI NIH HHS F31CA183309NCI NIH HHS P30 CA016086NCI NIH HHS R01 CA177993NIDDK NIH HHS P30 DK034987NIDDK NIH HHS P30 DK34987NIH HHS OD0205
6 · The paper itself

Abstract

The polarity of proliferative and differentiated cellular compartments of colonic crypts is believed to be specified by gradients of key mitogens and morphogens. Indirect evidence demonstrates a tight correlation between Wnt- pathway activity and the basal-luminal patterning; however, to date there has been no direct experimental manipulation demonstrating that a chemical gradient of signaling factors can produce similar patterning under controlled conditions. In the current work, colonic organoids (colonoids) derived from cultured, multicellular organoid fragments or single stem cells were exposed in culture to steep linear gradients of two Wnt-signaling ligands, Wnt-3a and R-spondin1. The use of a genetically engineered Sox9-Sox9EGFP:CAGDsRED reporter gene mouse model and EdU-based labeling enabled crypt patterning to be quantified in the developing colonoids. Colonoids derived from multicellular fragments cultured for 5 days under a Wnt-3a or a combined Wnt-3a and R-spondin1 gradient were highly polarized with proliferative cells localizing to the region of the higher morphogen concentration. In a Wnt-3a gradient, Sox9EGFP polarization was 7.3 times greater than that of colonoids cultured in the absence of a gradient; and the extent of EdU polarization was 2.2 times greater than that in the absence of a gradient. Under a Wnt-3a/R-spondin1 gradient, Sox9EGFP polarization was 8.2 times greater than that of colonoids cultured in the absence of a gradient while the extent of EdU polarization was 10 times greater than that in the absence of a gradient. Colonoids derived from single stem cells cultured in Wnt-3a/R-spondin1 gradients were most highly polarized demonstrated by a Sox9EGFP polarization 20 times that of colonoids grown in the absence of a gradient. This data provides direct evidence that a linear gradient of Wnt signaling factors applied to colonic stem cells is sufficient to direct patterning of the colonoid unit in culture.

Indexed as

Wnt Signaling PathwayAnimalsCell Culture TechniquesCell PolarityCell ProliferationCells, CulturedColonIntestinal MucosaMiceMice, TransgenicOrganoidsStem CellsThrombospondinsWnt3A ProteinWnt ProteinsRSPO1 protein, mouseThrombospondinsWnt3A ProteinWnt Proteins

Identifiers

PMID27100890
PMCPMC4839657

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.