Evidence map›Paper›PMID 27100835›Full record

ArticleComputers in biology and medicine2016

Pseudo progression identification of glioblastoma with dictionary learning.

Jian Zhang, Hengyong Yu, Xiaohua Qian, Keqin Liu, Hua Tan, Tielin Yang, Maode Wang, King Chuen Li, Michael D Chan, Waldemar Debinski and 3 more

Abstract read
In one paragraph

Article in Computers in biology and medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 3 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Jian ZhangDepartment of Diagnostic Radiology, Wake Forest Medical School, Winston-Salem, NC 27103, USA.
Hengyong YuDepartment of Electrical and Computer Engineering, University of Masachusetts Lowell, Lowell, MA 01854, USA.
Xiaohua QianDepartment of Diagnostic Radiology, Wake Forest Medical School, Winston-Salem, NC 27103, USA.
Keqin LiuDepartment of Diagnostic Radiology, Wake Forest Medical School, Winston-Salem, NC 27103, USA.
Hua TanDepartment of Diagnostic Radiology, Wake Forest Medical School, Winston-Salem, NC 27103, USA.
Tielin YangSchool of Life Science, Xi'an Jiaotong University, Xi'an, Shanxi 710049, China.
Maode WangThe First Affiliated Hospital, Xi'an Jiaotong University, Xi'an, Shanxi 710049, China.
King Chuen LiDepartment of Diagnostic Radiology, Wake Forest Medical School, Winston-Salem, NC 27103, USA.
Michael D ChanDepartment of Radiation Oncology, Wake Forest Medical School, Winston-Salem, NC 27103, USA.
Waldemar DebinskiDepartment of Radiation Oncology, Wake Forest Medical School, Winston-Salem, NC 27103, USA.
Anna PaulssonDepartment of Radiation Oncology, Wake Forest Medical School, Winston-Salem, NC 27103, USA.
Ge WangDepartment of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY 12180, USA.
Xiaobo ZhouDepartment of Diagnostic Radiology, Wake Forest Medical School, Winston-Salem, NC 27103, USA. Electronic address: xizhou@wakehealth.edu.

Funding

Modelling the Growth of the MIC Niche at the System LevelU01CA166886 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI ZHOU, XIAOBO · 2012 to 2016
$2.2M
NCI NIH HHS U01 CA166886
6 · The paper itself

Abstract

objectiveAlthough the use of temozolomide in chemoradiotherapy is effective, the challenging clinical problem of pseudo progression has been raised in brain tumor treatment. This study aims to distinguish pseudo progression from true progression. MATERIALS AND

methodsBetween 2000 and 2012, a total of 161 patients with glioblastoma multiforme (GBM) were treated with chemoradiotherapy at our hospital. Among the patients, 79 had their diffusion tensor imaging (DTI) data acquired at the earliest diagnosed date of pseudo progression or true progression, and 23 had both DTI data and genomic data. Clinical records of all patients were kept in good condition. Volumetric fractional anisotropy (FA) images obtained from the DTI data were decomposed into a sequence of sparse representations. Then, a feature selection algorithm was applied to extract the critical features from the feature matrix to reduce the size of the feature matrix and to improve the classification accuracy.

resultsThe proposed approach was validated using the 79 samples with clinical DTI data. Satisfactory results were obtained under different experimental conditions. The area under the receiver operating characteristic (ROC) curve (AUC) was 0.87 for a given dictionary with 1024 atoms. For the subgroup of 23 samples, genomics data analysis was also performed. Results implied further perspective on pseudo progression classification.

conclusionsThe proposed method can determine pseudo progression and true progression with improved accuracy. Laboring segmentation is no longer necessary because this skillfully designed method is not sensitive to tumor location.

Indexed as

Diffusion Magnetic Resonance ImagingMachine LearningChemoradiotherapyDacarbazineFemaleGlioblastomaHumansImage Processing, Computer-AssistedMaleTemozolomideDacarbazineTemozolomideDictionary learningDiffusion tensor imaging (DTI)Fractional anisotropy (FA)Genomics analysisGlioblastoma multiformePseudo progression

Identifiers

PMID27100835
PMCPMC5094462

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.