Evidence map›Paper›PMID 27100458›Full record

ArticleThe Journal of general virology2016

Transcription enhancers as major determinants of SV40 polyomavirus growth efficiency and host cell tropism.

Katharina Schmidt, Simon Keiser, Viola Günther, Oleg Georgiev, Hans H Hirsch, Walter Schaffner, Tobias Bethge

Open access · hybridAbstract read
In one paragraph

Article in The Journal of general virology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Katharina SchmidtInstitute of Molecular Life Sciences, University of Zurich, CH-8057 Zurich, Switzerland.
Simon KeiserInstitute of Molecular Life Sciences, University of Zurich, CH-8057 Zurich, Switzerland.
Viola GüntherInstitute of Molecular Life Sciences, University of Zurich, CH-8057 Zurich, Switzerland.
Oleg GeorgievInstitute of Molecular Life Sciences, University of Zurich, CH-8057 Zurich, Switzerland.
Hans H HirschTransplantation & Clinical Virology, Department of Biomedicine, Petersplatz 10, University of Basel, CH-4009 Basel, Switzerland.
Walter SchaffnerInstitute of Molecular Life Sciences, University of Zurich, CH-8057 Zurich, Switzerland.
Tobias BethgeInstitute of Molecular Life Sciences, University of Zurich, CH-8057 Zurich, Switzerland.
University of Zurich · CHUniversity of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The non-coding control region (NCCR) of polyomaviruses includes the promoters for early and late genes, a transcription enhancer and the origin of DNA replication. Particularly virulent variants of the human pathogens BKPyV and JCPyV, as well as of simian virus 40 (SV40), occur in vitro and in vivo. These strains often harbour rearrangements in their NCCR, typically deletions of some DNA segment(s) and/or duplications of others. Using an SV40-based model system we provide evidence that duplications of enhancer elements, whether from SV40 itself or from the related BKPyV and JCPyV, increase early gene transcription and replicative capacity. SV40 harbouring subsegments of the strong cytomegalovirus (HCMV) enhancer replicated better than the common 'wild-type' SV40 in the human cell lines HEK293 and U2OS. In conclusion, replacing the SV40 enhancer with heterologous enhancers can profoundly influence SV40's infective capacity, underscoring the potential of small DNA viruses to overcome cell type and species barriers.

Indexed as

AnimalsBase SequenceBK VirusCell LineChlorocebus aethiopsCytomegalovirusDNA ReplicationDNA, ViralEnhancer Elements, GeneticHEK293 CellsHep G2 CellsHumansJC VirusMicePromoter Regions, GeneticSimian virus 40DNA, Viral

Identifiers

PMID27100458
PMCPMC5410105
OpenAlexW2337812397

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.