Evidence map›Paper›PMID 27100228›Full record

ReviewAnalytical and bioanalytical chemistry2016

Application of whole genome shotgun sequencing for detection and characterization of genetically modified organisms and derived products.

Arne Holst-Jensen, Bjørn Spilsberg, Alfred J Arulandhu, Esther Kok, Jianxin Shi, Jana Zel

Open access · hybridAbstract readReview
In one paragraph

Review in Analytical and bioanalytical chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 4 countries.

Arne Holst-JensenNorwegian Veterinary Institute, Ullevaalsveien 68, P.O. Box 750, Sentrum, 0106, Oslo, Norway. arne.holst-jensen@vetinst.no.
Bjørn SpilsbergNorwegian Veterinary Institute, Ullevaalsveien 68, P.O. Box 750, Sentrum, 0106, Oslo, Norway.
Alfred J ArulandhuRIKILT, Wageningen UR, P.O. Box 230, 6700 AE, Wageningen, The Netherlands.
Esther KokRIKILT, Wageningen UR, P.O. Box 230, 6700 AE, Wageningen, The Netherlands.
Jianxin ShiJoint International Research Laboratory of Metabolic & Developmental Sciences, Shanghai Jiao Tong University-University of Adelaide Joint Centre for Agriculture and Health, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China.
Jana ZelNational Institute of Biology, Večna pot 111, 1000, Ljubljana, Slovenia.
Norwegian Veterinary Institute · NOWageningen University & Research · NLNational Institute of Biology · SIShanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The emergence of high-throughput, massive or next-generation sequencing technologies has created a completely new foundation for molecular analyses. Various selective enrichment processes are commonly applied to facilitate detection of predefined (known) targets. Such approaches, however, inevitably introduce a bias and are prone to miss unknown targets. Here we review the application of high-throughput sequencing technologies and the preparation of fit-for-purpose whole genome shotgun sequencing libraries for the detection and characterization of genetically modified and derived products. The potential impact of these new sequencing technologies for the characterization, breeding selection, risk assessment, and traceability of genetically modified organisms and genetically modified products is yet to be fully acknowledged. The published literature is reviewed, and the prospects for future developments and use of the new sequencing technologies for these purposes are discussed.

Indexed as

GenomeOrganisms, Genetically ModifiedHigh-Throughput Nucleotide SequencingTranscriptomeTransgenesCisgeneIntrageneTraceabilityTranscriptome sequencingTransgeneUnknown GMO

Identifiers

PMID27100228
PMCPMC4909802
OpenAlexW2338969610

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.