Evidence map›Paper›PMID 27099376›Full record

ArticleJournal of experimental botany2016

A petunia ethylene-responsive element binding factor, PhERF2, plays an important role in antiviral RNA silencing.

Daoyang Sun, Raja Sekhar Nandety, Yanlong Zhang, Michael S Reid, Lixin Niu, Cai-Zhong Jiang

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
8.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Microorganisms · 2023
    Article
  5. The Role of Plant Transcription Factors in the Fight against Plant Viruses.International journal of molecular sciences · 2023
    Review
  6. Article
  7. International journal of molecular sciences · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Horticulture research · 2019
    Article
  14. Article
  15. Transcriptomic and Functional Analyses Reveal ThatFrontiers in plant science · 2018
    Article
  16. SAGA complex mediates the transcriptional up-regulation of antiviral RNA silencing.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Daoyang SunDepartment of Landscape Architecture and Arts, Northwest A&F University, Yangling, Shaanxi 712100, China Department of Plant Sciences, University of California Davis, Davis, CA 95616, USA.
Raja Sekhar NandetyDepartment of Plant Pathology, University of California Davis, Davis, CA 95616, USA.
Yanlong ZhangDepartment of Landscape Architecture and Arts, Northwest A&F University, Yangling, Shaanxi 712100, China.
Michael S ReidDepartment of Plant Sciences, University of California Davis, Davis, CA 95616, USA.
Lixin NiuDepartment of Landscape Architecture and Arts, Northwest A&F University, Yangling, Shaanxi 712100, China niulixin@nwsuaf.edu.cn cjiang@ucdavis.edu.
Cai-Zhong JiangCrops Pathology and Genetic Research Unit, United States Department of Agriculture, Agricultural Research Service, Davis, CA 95616, USA niulixin@nwsuaf.edu.cn cjiang@ucdavis.edu.
University of California, Davis · USNorthwest A&F University · CNAgricultural Research Service · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Virus-induced RNA silencing is involved in plant antiviral defense and requires key enzyme components, including RNA-dependent RNA polymerases (RDRs), Dicer-like RNase III enzymes (DCLs), and Argonaute proteins (AGOs). However, the transcriptional regulation of these critical components is largely unknown. In petunia (Petunia hybrida), an ethylene-responsive element binding factor, PhERF2, is induced by Tobacco rattle virus (TRV) infection. Inclusion of a PhERF2 fragment in a TRV silencing construct containing reporter fragments of phytoene desaturase (PDS) or chalcone synthase (CHS) substantially impaired silencing efficiency of both the PDS and CHS reporters. Silencing was also impaired in PhERF2- RNAi lines, where TRV-PhPDS infection did not show the expected silencing phenotype (photobleaching). In contrast, photobleaching in response to infiltration with the TRV-PhPDS construct was enhanced in plants overexpressing PhERF2 Transcript abundance of the RNA silencing-related genes RDR2, RDR6, DCL2, and AGO2 was lower in PhERF2-silenced plants but higher in PhERF2-overexpressing plants. Moreover, PhERF2-silenced lines showed higher susceptibility to Cucumber mosaic virus (CMV) than wild-type (WT) plants, while plants overexpressing PhERF2 exhibited increased resistance. Interestingly, growth and development of PhERF2-RNAi lines were substantially slower, whereas the overexpressing lines were more vigorous than the controls. Taken together, our results indicate that PhERF2 functions as a positive regulator in antiviral RNA silencing.

Indexed as

RNA InterferenceDNA-Binding ProteinsPetuniaPlant DiseasesPlant ProteinsPlant VirusesRNA, ViralRNA VirusesDNA-Binding Proteinsethylene-responsive element binding proteinPlant ProteinsRNA, ViralArgonautecucumberdicer-like enzymemosaicrattleRNA-dependent RNA polymerasetobaccotranscription factorvirusvirus-induced gene silencing.

Identifiers

PMID27099376
PMCPMC4892726
OpenAlexW2336927501

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.