Evidence map›Paper›PMID 27098524›Full record

ArticleFunctional & integrative genomics2016

Differential transcriptome analysis of leaves of tea plant (Camellia sinensis) provides comprehensive insights into the defense responses to Ectropis oblique attack using RNA-Seq.

Ya-Nan Wang, Lei Tang, Yan Hou, Ping Wang, Hua Yang, Chao-Ling Wei

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In one paragraph

Article in Functional & integrative genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
13.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 113 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ya-Nan WangState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, Anhui, 230036, People's Republic of China.
Lei TangState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, Anhui, 230036, People's Republic of China.
Yan HouState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, Anhui, 230036, People's Republic of China.
Ping WangState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, Anhui, 230036, People's Republic of China.
Hua YangState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, Anhui, 230036, People's Republic of China.
Chao-Ling WeiState Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang West Road, Hefei, Anhui, 230036, People's Republic of China. weichl@ahau.edu.cn.
Anhui Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tea is a very popular and healthy nonalcoholic beverage worldwide. As an evergreen woody plant, the cultivation of tea plants (Camellia sinensis) is challenged by biotic stresses, and one of which is feeding of Ectropis oblique. In China, E. oblique infestation causes serious damages in many tea cultivation areas. Tea plants have evolved sophisticated strategies to cope with attack by E. oblique. To elucidate the molecular mechanisms of the response to E. oblique in tea plants, the differential gene expression profiles between the E. oblique damage-induced tea plants and undamaged control using RNA sequencing (RNA-Seq) were obtained. A total of 1859 differentially expressed genes were identified, including 949 upregulated and 910 downregulated genes. Overall, 90 signal transduction genes, 100 anti-insect responsive transcription factors, 50 genes related to phenylpropanoid biosynthesis, 41 unigenes related to herbivore-induced plant volatiles (HIPVs) biosynthesis, and 8 caffeine biosynthesis genes were found to be differentially regulated. Metabolic pathway analysis indicated that plant secondary metabolites and the signaling pathways may play an important role in defense against insects, and a closer examination at the expression of some crucial genes revealed differential expression patterns after feeding by E. oblique. Furthermore, quantitative RT-PCR (qRT-PCR) analysis further confirmed the results of RNA-Seq. Our dataset provides the most comprehensive sequence resource available for studying the resistance to E. oblique in tea, which will benefit our understanding of the overall mechanisms underlying inducible defenses responses, and may be useful to create novel prevention measures against insects to reduce pesticide usage in eco-friendly tea farming.

Indexed as

AnimalsCamellia sinensisChinaGene Expression ProfilingGene Expression Regulation, PlantHigh-Throughput Nucleotide SequencingHost-Parasite InteractionsLepidopteraPlant LeavesPlant ProteinsTeaTranscriptomePlant ProteinsTeaCamellia sinensisDefense responseEctropis obliqueGene expressionPlant–insect interactionRNA-Seq

Identifiers

PMID27098524
OpenAlexW2461281803

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.