Evidence map›Paper›PMID 27098205›Full record

ReviewHuman genomics2016

Organization, evolution and functions of the human and mouse Ly6/uPAR family genes.

Chelsea L Loughner, Elspeth A Bruford, Monica S McAndrews, Emili E Delp, Sudha Swamynathan, Shivalingappa K Swamynathan

Open access · goldAbstract readReview
In one paragraph

Review in Human genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 187 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Exploring the molecular function of LYPD3 from pan-cancer to lung cancer: based on bioinformatics and cellular experiments.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Pre-Existing Diabetes Alters Pulmonary Inflammatory Gene Expression Priming for Injury.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Chelsea L LoughnerDepartment of Ophthalmology, University of Pittsburgh School of Medicine, Pittsburgh, USA.
Elspeth A BrufordHUGO Gene Nomenclature Committee (HGNC), European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK.
Monica S McAndrewsMouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME, 04609, USA.
Emili E DelpDepartment of Ophthalmology, University of Pittsburgh School of Medicine, Pittsburgh, USA.
Sudha SwamynathanDepartment of Ophthalmology, University of Pittsburgh School of Medicine, Pittsburgh, USA.
Shivalingappa K SwamynathanDepartment of Ophthalmology, University of Pittsburgh School of Medicine, Pittsburgh, USA. Swamynathansk@upmc.edu.
University of Pittsburgh · USEuropean Bioinformatics Institute · GBJackson Laboratory · US

Funding

SOFTWARE AND DATABASE SYSTEM DEVELOPMENTP41HG000330 · NHGRI · JACKSON LABORATORY · PI EPPIG, JANAN T. · 1995 to 2010
$72.1M
Mouse Genome DatabaseU41HG000330 · NHGRI · JACKSON LABORATORY · PI BLAKE, JUDITH A, BULT, CAROL J · 2011 to 2020
$45.5M
Virus Production and Manipulation of Protein/Gene Expression ModuleP30EY008098 · NEI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Yuanyuan Chen · 1989 to 2026
$17.8M
Nomenclature of Human and Vertebrate GenesU41HG003345 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI BIRNEY, EWAN, BRUFORD, ELSPETH · 2013 to 2017
$2.4M
Corneal Expression and Function of Slurp1R01EY022898 · NEI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SWAMYNATHAN, SHIVALINGAPPA KOTTUR · 2013 to 2016
$1.5M
NEI NIH HHS P30 EY008098NEI NIH HHS P30 EY08098NEI NIH HHS R01 EY022898NEI NIH HHS R01EY022898NHGRI NIH HHS P41 HG000330NHGRI NIH HHS U41 HG000330NHGRI NIH HHS U41 HG003345Wellcome Trust
6 · The paper itself

Abstract

Members of the lymphocyte antigen-6 (Ly6)/urokinase-type plasminogen activator receptor (uPAR) superfamily of proteins are cysteine-rich proteins characterized by a distinct disulfide bridge pattern that creates the three-finger Ly6/uPAR (LU) domain. Although the Ly6/uPAR family proteins share a common structure, their expression patterns and functions vary. To date, 35 human and 61 mouse Ly6/uPAR family members have been identified. Based on their subcellular localization, these proteins are further classified as GPI-anchored on the cell membrane, or secreted. The genes encoding Ly6/uPAR family proteins are conserved across different species and are clustered in syntenic regions on human chromosomes 8, 19, 6 and 11, and mouse Chromosomes 15, 7, 17, and 9, respectively. Here, we review the human and mouse Ly6/uPAR family gene and protein structure and genomic organization, expression, functions, and evolution, and introduce new names for novel family members.

Indexed as

AnimalsAntigens, LyChromosomesGenome, HumanHumansMiceMultigene FamilyNeutrophilsProtein DomainsReceptors, Urokinase Plasminogen ActivatorSignal TransductionAntigens, LyLy6 protein, mouseReceptors, Urokinase Plasminogen ActivatorLU domainLy6/uPAR familyLymphocytesNeutrophilsThree-finger domainuPAR

Identifiers

PMID27098205
PMCPMC4839075
OpenAlexW2337860753

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.