Evidence map›Paper›PMID 27097026›Full record

ArticlePLoS pathogens2016

Novel Polymerase Gene Mutations for Human Adaptation in Clinical Isolates of Avian H5N1 Influenza Viruses.

Yasuha Arai, Norihito Kawashita, Tomo Daidoji, Madiha S Ibrahim, Emad M El-Gendy, Tatsuya Takagi, Kazuo Takahashi, Yasuo Suzuki, Kazuyoshi Ikuta, Takaaki Nakaya and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 52 citations in OpenAlex.

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  15. Modeling theBiomolecules · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Yasuha AraiDepartment of Viral infection, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Norihito KawashitaGraduate School of Pharmaceutical Sciences, Osaka University, Osaka, Japan.
Tomo DaidojiDepartment of Infectious Diseases, Kyoto Prefectural University of Medicine, Kyoto, Japan.
Madiha S IbrahimDepartment of Infectious Diseases, Kyoto Prefectural University of Medicine, Kyoto, Japan.
Emad M El-GendyDepartment of Infectious Diseases, Kyoto Prefectural University of Medicine, Kyoto, Japan.
Tatsuya TakagiGraduate School of Pharmaceutical Sciences, Osaka University, Osaka, Japan.
Kazuo TakahashiDepartment of Laboratory Examination, International University of Health and Welfare Hospital, Tochigi, Japan.
Yasuo SuzukiHealth Science Hills, College of Life and Health Sciences, Chubu University, Aichi, Japan.
Kazuyoshi IkutaDepartment of Virology, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Takaaki NakayaDepartment of Infectious Diseases, Kyoto Prefectural University of Medicine, Kyoto, Japan.
Tatsuo ShiodaDepartment of Viral infection, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Yohei WatanabeDepartment of Viral infection, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Osaka University · JPKyoto Prefectural University of Medicine · JPChubu University · JPDamanhour University · EGInternational University of Health and Welfare · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A major determinant in the change of the avian influenza virus host range to humans is the E627K substitution in the PB2 polymerase protein. However, the polymerase activity of avian influenza viruses with a single PB2-E627K mutation is still lower than that of seasonal human influenza viruses, implying that avian viruses require polymerase mutations in addition to PB2-627K for human adaptation. Here, we used a database search of H5N1 clade 2.2.1 virus sequences with the PB2-627K mutation to identify other polymerase adaptation mutations that have been selected in infected patients. Several of the mutations identified acted cooperatively with PB2-627K to increase viral growth in human airway epithelial cells and mouse lungs. These mutations were in multiple domains of the polymerase complex other than the PB2-627 domain, highlighting a complicated avian-to-human adaptation pathway of avian influenza viruses. Thus, H5N1 viruses could rapidly acquire multiple polymerase mutations that function cooperatively with PB2-627K in infected patients for optimal human adaptation.

Indexed as

Adaptation, PhysiologicalAnimalsBlotting, WesternDisease Models, AnimalDNA-Directed RNA PolymerasesFemaleHumansInfluenza A Virus, H5N1 SubtypeInfluenza, HumanMiceMice, Inbred BALB CMutagenesis, Site-DirectedMutationReal-Time Polymerase Chain ReactionTransfectionViral ProteinsDNA-Directed RNA PolymerasesPB2 protein, influenza virusViral Proteins

Identifiers

PMID27097026
PMCPMC4838241
OpenAlexW2339753844

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.