Evidence map›Paper›PMID 27097020›Full record

ArticleAutophagy2016

Autophagy initiation correlates with the autophagic flux in 3D models of mesothelioma and with patient outcome.

Carlo Follo, Dario Barbone, William G Richards, Raphael Bueno, V Courtney Broaddus

Open access · hybridAbstract read
In one paragraph

Article in Autophagy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

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  12. Targeting autophagy in cancer.Nature reviews. Cancer · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Carlo Folloa San Francisco General Hospital, University of California San Francisco , San Francisco , CA , USA.
Dario Barbonea San Francisco General Hospital, University of California San Francisco , San Francisco , CA , USA.
William G Richardsb Division of Thoracic Surgery, Brigham and Women's Hospital , Boston , MA , USA.
Raphael Buenob Division of Thoracic Surgery, Brigham and Women's Hospital , Boston , MA , USA.
V Courtney Broaddusa San Francisco General Hospital, University of California San Francisco , San Francisco , CA , USA.
Brigham and Women's Hospital · USSan Francisco General Hospital · USUniversity of California, San Francisco · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the role of autophagy in cancer has been limited by the inability to measure this dynamic process in formalin-fixed tissue. We considered that 3-dimensional models including ex vivo tumor, such as we have developed for studying mesothelioma, would provide valuable insights. Using these models, in which we could use lysosomal inhibitors to measure the autophagic flux, we sought a marker of autophagy that would be valid in formalin-fixed tumor and be used to assess the role of autophagy in patient outcome. Autophagy was studied in mesothelioma cell lines, as 2-dimensional (2D) monolayers and 3-dimensional (3D) multicellular spheroids (MCS), and in tumor from 25 chemonaive patients, both as ex vivo 3D tumor fragment spheroids (TFS) and as formalin-fixed tissue. Autophagy was evaluated as autophagic flux by detection of the accumulation of LC3 after lysosomal inhibition and as autophagy initiation by detection of ATG13 puncta. We found that autophagic flux in 3D, but not in 2D, correlated with ATG13 positivity. In each TFS, ATG13 positivity was similar to that of the original tumor. When tested in tissue microarrays of 109 chemonaive patients, higher ATG13 positivity correlated with better prognosis and provided information independent of known prognostic factors. Our results show that ATG13 is a static marker of the autophagic flux in 3D models of mesothelioma and may also reflect autophagy levels in formalin-fixed tumor. If confirmed, this marker would represent a novel prognostic factor for mesothelioma, supporting the notion that autophagy plays an important role in this cancer.

Indexed as

Adaptor Proteins, Signal TransducingAnimalsAutophagyAutophagy-Related ProteinsCell Culture TechniquesCell LineFormaldehydeHumansMesotheliomaTreatment OutcomeAdaptor Proteins, Signal TransducingATG13 protein, humanAutophagy-Related ProteinsFormaldehyde3-dimensionalATG13autophagic fluxautophagy initiationex vivomesotheliomamulticellular spheroidsoutcome

Identifiers

PMID27097020
PMCPMC4990992
OpenAlexW2336607854

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.